Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0589 ATGGAGTCAGATCTTCAGCAGCACCCTCCCGTGTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCGTATTTTTCCAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGATGCTGCTGCTGCTGCTGATGCAGAGGAGGCACTTCCTACTCAAAATCCCTCAACCGTTGTTGCTGTTAAAGAAGAGGTCAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCCCTTGTTCTCCAACAACAACAACAGCACCAACAACAAAGTAATATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACACTGGGCGACCACCTTTGCCAAACCAGATAGAGACTGGTCGTAGAACTGCTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGCAAGGGGCATGGGGACTATGGGAGCTGTTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATGTCATCTAGGGCCGAAATTGGAAACAAAAGCAGTACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAATCAGGGCAATGAATTTATCCCTGGTTTCCCCGTTGGTTCATGGGACGATTCTGCAATAATGTCTGACAATATGACAGGTCGGAAGAGATACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACGTATCTGAAAGTCAGAATGAAGCAGGAGGCCAGCCTTCTACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACGTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACACCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGATAATCGCGATAAGTGTACGTGTTCGCACAAGGAGCAGCAGCAGCAATAA 1251 0.4468 MESDLQQHPPVFLDHHQQQTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAAAAADAEEALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQQQHQQQSNINNYGSSAPQNFYQNTGRPPLPNQIETGRRTASNLIRHGSSPAGLFSNINIESGYAAARGMGTMGAVNNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKSSTQNNAENEGFAENQGNEFIPGFPVGSWDDSAIMSDNMTGRKRYREEDVKPFSGLNVSESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLHLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSDNRDKCTCSHKEQQQQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0589 416 MobiDBLite consensus disorder prediction 12 27 - -
Pvu11g0589 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Pvu11g0589 416 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 412 - -
Pvu11g0589 416 MobiDBLite consensus disorder prediction 232 251 - -
Pvu11g0589 416 Coils Coil 382 409 - -
Pvu11g0589 416 MobiDBLite consensus disorder prediction 232 246 - -
Pvu11g0589 416 SMART finulus 348 398 IPR011598 GO:0046983
Pvu11g0589 416 Gene3D - 343 415 IPR036638 GO:0046983
Pvu11g0589 416 MobiDBLite consensus disorder prediction 1 27 - -
Pvu11g0589 416 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Pvu11g0589 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 405 IPR036638 GO:0046983
Pvu11g0589 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0589 Pvu-Chr11 4921224 4925359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0589 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.573 8.11e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g0589 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0589 - - gmx:100803833 648.277