Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0569 ATGGAGTCGGAGGATGATATGCATGACGCCAACGACATCGAGTCCCTCGACGATTTCTACAGCGGCGAAACCGAGGATGCACCCTTGGACTACTACAGCGATTACGACGATGATGCCGATGATTACTTCGATGAAGCCGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGATATCCAACAAAGACAGGAAGATGATGTCGCCAGAGTAGCAACTGTTCTTTCCATATCAAGAGTTTTTGCAAGCATACTACTTCGTTACCACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCAGACGAAGAAGGAGTCAGAAAAGCAGTTGGATTGTTGGAGAAGCCAATTGTCCAGCATGATAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAGTGATGGTCCCGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGCTTAGTCTTTTAAAATCTGATGAAGATAAGCAGAAATATACACGTTATCTTCTTAGATCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTCACTTTTGATGTTGGTAGTGGTGGGAATTATGATGTCTCTTGCCTCTGTTCATATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGGACCGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGTAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTCAATGGTCGGAACATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAAGGGGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCACTAGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAAATAATTGAGTGTAGAAGAGTACTGAAATGGACATACGCATATGGGTTCTACTTACCGGAGCATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGACCCATCTAGAGAGTTCAATGACTTTCGCACAAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCATTAGAGAATGGTTTATGTGATGTGGATAGTAATGGAGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGGTGCAGGGAGCAGTAAGGGGAAATCTGGAAGAGTAAAGGCAACTTTTCGAACCAGCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAGATCTGCCATCACATGCCAGATGTGCTATCAACAACGTCGATGA 1767 0.4341 MESEDDMHDANDIESLDDFYSGETEDAPLDYYSDYDDDADDYFDEADRIESRRPEQNFTILKESDIQQRQEDDVARVATVLSISRVFASILLRYHNWSVSRVHDAWFADEEGVRKAVGLLEKPIVQHDNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSISDGPGCLMLRCPDPTCGAAVGQDMLSLLKSDEDKQKYTRYLLRSYIEDNKKSKWCPAPGCEYAVTFDVGSGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSEHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADDPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLCDVDSNGASFSKATSSKNGAGSSKGKSGRVKATFRTSSMSSRMNDDSHWCCEHCTYANVRSAITCQMCYQQRR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0569 588 SUPERFAMILY RING/U-box 205 274 - -
Pvu11g0569 588 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Pvu11g0569 588 SMART ibrneu5 271 341 IPR002867 -
Pvu11g0569 588 SMART ibrneu5 204 267 IPR002867 -
Pvu11g0569 588 MobiDBLite consensus disorder prediction 527 546 - -
Pvu11g0569 588 Pfam IBR domain, a half RING-finger domain 204 267 IPR002867 -
Pvu11g0569 588 Pfam IBR domain, a half RING-finger domain 284 331 IPR002867 -
Pvu11g0569 588 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 535 - -
Pvu11g0569 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Pvu11g0569 588 CDD RING-HC_RBR_TRIAD1_like 135 185 - -
Pvu11g0569 588 SUPERFAMILY RING/U-box 286 334 - -
Pvu11g0569 588 Pfam Ariadne domain 354 515 IPR045840 -
Pvu11g0569 588 Gene3D - 263 518 - -
Pvu11g0569 588 ProSiteProfiles TRIAD supradomain profile. 131 345 IPR044066 -
Pvu11g0569 588 MobiDBLite consensus disorder prediction 1 34 - -
Pvu11g0569 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Pvu11g0569 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 535 IPR031127 GO:0004842|GO:0016567
Pvu11g0569 588 SUPERFAMILY RING/U-box 130 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0569 Pvu-Chr11 4724950 4732978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0569 13 587 ARIADNE family AT1G65430 69.625 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0569 K11968 - gmx:100784195 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1567 5 37929908 37937340 Pvu11g0569 11 4724950 4732978 PCT