Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0568 ATGGGAAGTTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGTAAAGCACACAAGCAAGCCCTCGTCCCCGCGAGGGCAAGGGCATGGCCACGAGCAGACGCGGAGGTCCAGCGTGGTGGCTCCTAGGTCCAGTGTGACGGCGCGTCCGCTGAACGTGGTGGCCAACCCGAGTCCGGGGAACATATTCGACAAGTACCAGTTCGGGAAGGAGCTGGGGCGCGGCGAGTTCGGCGTGACTCACCGTGTGGTGGATTTGGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATTGCGAAGACGAAGCTGAGGACGGAGATTGACGTGGAGGATGTGAAGAGAGAGGTGCAGATCATGAGGCACTTGCCGAGGCACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCTGTGTACCTCGTCATGGAACTCTGTGAAGGTGGTGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCTGCTGCTAATGTTGCCAAGACCATTCTTGAAGTTTGCAAGGTTTGTCATGCGCACGGAGTGATACACAGGGACCTGAAACCTGAAAACTTCTTATTTGCAGATGCAAGCGAGACTGCTGCATTGAAGTCAATTGATTTTGGTCTTTCCACCTTCTATGTGCCTGGTGAAAAGTTCAGTGAAATTGTTGGAAGTCCTTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACAAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAGTCTATCATCAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAACGCATGCTTGATCCAAGCCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGATAATACCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCAGATAACCTATCAGATGAGCAACTTGCTATGTTTAAGAAAATGTTCGATATGATGGATAAGGACAAAAATGGAAATTTGTCATTTGAAGAGCTCAAAGATGGCCTTTCAATGATTGGACACGCCATTCCTGATCCTGATGTCCAAATGTTAATGGAAGCTGCGGATATTGATGGAAACGGCACCCTTAACTATGATGAGTTTATCACAATGAGTGTTCACCTGAAAAAGATCGAAGGTGATGAGCATCTCTCTCAAGCATTCCGTTACTTTGACAAGAATCAGACCGGGTATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCAGATGATGAGTCGGAAGTCATGAACGACCAAGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGGGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCTCGGCAGTATTCAAGAGCATTGCTGAATGCATTAAGCATCAAGTTGTTTAAAGACACACCTATGAAAGTGTAA 1620 0.4599 MGSCISTQGVRTRKRVKHTSKPSSPRGQGHGHEQTRRSSVVAPRSSVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVKREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHAHGVIHRDLKPENFLFADASETAALKSIDFGLSTFYVPGEKFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQSIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPSPFTRITVQEVLDNTWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQLAMFKKMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQMLMEAADIDGNGTLNYDEFITMSVHLKKIEGDEHLSQAFRYFDKNQTGYVEFEELKDALSDDESEVMNDQVIKDILNDVDLDKDGRISFGEFKAMMKTGGDWKMASRQYSRALLNALSIKLFKDTPMKV* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0568 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Pvu11g0568 539 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Pvu11g0568 539 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Pvu11g0568 539 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Pvu11g0568 539 Gene3D - 334 509 - -
Pvu11g0568 539 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Pvu11g0568 539 Pfam EF-hand domain pair 443 507 IPR002048 GO:0005509
Pvu11g0568 539 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Pvu11g0568 539 SUPERFAMILY Protein kinase-like (PK-like) 55 333 IPR011009 -
Pvu11g0568 539 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Pvu11g0568 539 CDD EFh 372 432 IPR002048 GO:0005509
Pvu11g0568 539 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g0568 539 Pfam EF-hand domain pair 385 435 IPR002048 GO:0005509
Pvu11g0568 539 Gene3D Transferase(Phosphotransferase) domain 1 153 333 - -
Pvu11g0568 539 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Pvu11g0568 539 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Pvu11g0568 539 MobiDBLite consensus disorder prediction 1 46 - -
Pvu11g0568 539 SUPERFAMILY EF-hand 362 512 IPR011992 -
Pvu11g0568 539 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 47 522 - -
Pvu11g0568 539 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 522 - -
Pvu11g0568 539 CDD EFh 444 507 IPR002048 GO:0005509
Pvu11g0568 539 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g0568 539 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Pvu11g0568 539 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu11g0568 539 SMART efh_1 444 472 IPR002048 GO:0005509
Pvu11g0568 539 SMART efh_1 481 509 IPR002048 GO:0005509
Pvu11g0568 539 SMART efh_1 372 400 IPR002048 GO:0005509
Pvu11g0568 539 SMART efh_1 408 436 IPR002048 GO:0005509
Pvu11g0568 539 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Pvu11g0568 539 MobiDBLite consensus disorder prediction 22 46 - -
Pvu11g0568 539 CDD STKc_CAMK 66 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0568 Pvu-Chr11 4719324 4723394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0568 1 534 EF-hand Containing Proteins AT2G31500 65.441 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu11g0568 Pkinase 4.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0568 K13412 - gmx:100818929 952.199