Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0563 ATGTATCCCAAACGGTCAGGCCAAGATGGCCCTGATTCGAGACAAGTGCGCTCAAGTGACAGGATCAAGACGAGGCCAAACATTTATGGCCGACCATACTTGTTTTACAACCAAAATCTTAGGCGCACTAGGAAAAACAAGAACAAGACAAGGACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCAGGAATTCGGAAGTCACAAGATTCTAATACTAATTCTGGCTCTGCCAACCTTCGACGTTCAACAAGGAAGAGAAGGCTTAATGTAAATCTTGAAGATTTTACAGACAGCTCTGGAGCTGAAGATGAAGACTTAATGAGACCTGCATATCCGTTGTTGAGAAACCGGATTAAAAATAGAGTCAAACAGGATGGATTGATGTCTTCCAAGCGCAAAAGAGCAGCAGAGACTAAACCAACACCTCGACGTGAAGGTTTACGGCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTAATTTCTGAATCAGATGACGAGCAAGACCTTTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGTCGAGGACAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGTTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGGAATCGTTCAGATGTCCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGTAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCCTAGACATGCATGGAACAACAGCTTTCGGATTAAATCTTGCTTCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCAGGGATTCAAACTGCTGGACCAAGCTCTAAGGGTGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGTTTTGAAGATATAGGTGGGCTGTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATATCCAGATTTTTTTGCAAGTTATCACATAACTCCACCTAGGGGGGTGTTGTTGTGTGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCATCTATTATCTTCTTTGATGAAATAGATGGACTTGCGCCTGTGAGGTCTAGCAAGCAAGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGTGCTACCAACAGGATTGATGCTATTGATGGAGCTTTACGACGCCCTGGCAGATTTGATCGTGAGTTTACTTTTTCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAGGATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCACTTTGTACTGAAGCTGCCATCCATGCATTTCGTCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCGATGTCTACTATTACTCCTGCTGCTCATAGGGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCTATGAGTGTTATATCTGATATTTTCCCTCCAGCTTCTATTGCATCAGAGTTGACTAAACTTTCAATGCTTTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTACATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCGATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTCCTCCTGACTTTGCTGGAAGAATTACCATCTGATCTGCCTATCTTACTGCTTGGTACATCATCAGTTGCACTTGCTGAACTTGAGGAAGTGCCTACTTCAGTTTTCCCTCAGCGCACAATTTATGAAGTGAATATGCCATGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTGATAGAAGCTGCTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACAGGATACCTCCCTGAACTTCCTAAGGCGCCAAAATTGGCTAGTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTCCGTAGGTTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTGTCCAGTGTCCGACGAAGATGCACCAAATTATCGGTCAATTATACAGAACCCAATGGACATGGCTACCATCTTGCAGCATGTTGATAATGGCCAATATATTACATGTGCTGCATTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGCCTACAACGGAGAGGACTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGAATGCTCTCACAGATGGATCCAGCACTGGCAGCATATTGTGACAAGATTGCTAGCGAAGGTGGCCCAGTTCAGTTGTCTGATGAACTAGAGGATTCTACATTCCCTGCTTCTCCTGTTGTGGGTATTGGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGCGGTAAACGTGGATCAGAGTTATGAGGCATTGAAGCGAACCAAGAAGATCACCGAAGTGCATGCAGAAGACAAGTCACAAGATTCTGTACTGCCAAAGTCCTTCCAGGAGCATCAACCTGATGACACAGATGCTAAAAGCCTCGAAAGTATGTCAATGGAAGGAAACATGCATGAAACTGACCCTGCTGATGGCAACAGTTCTGAGGACGTCACAGTGCTAGATGATGAATTTTCAAGAGAAGTGGAGTCTGTCAAGGAACGTTTTGTAAAGCGTAGTGAAAATTTCAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTGTTTGAAACCAAAAATAAAAGAGTGAATGGGGATCTTAAGTCTTCAGTTTTGAAGTTTTTGTTGAATTTTTTGGAGGATGATGCAAATTTCTAA 3582 0.4375 MYPKRSGQDGPDSRQVRSSDRIKTRPNIYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGIRKSQDSNTNSGSANLRRSTRKRRLNVNLEDFTDSSGAEDEDLMRPAYPLLRNRIKNRVKQDGLMSSKRKRAAETKPTPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDVEDNDADDGQNEIEGDVEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDMHGTTAFGLNLASSGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFTFSLPGCEARAEILDIHTRKWKDPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPPASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVALAELEEVPTSVFPQRTIYEVNMPCAKDRTLFFNLLIEAAMSILLEGINKKSQDTGYLPELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHCPVSDEDAPNYRSIIQNPMDMATILQHVDNGQYITCAAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALAAYCDKIASEGGPVQLSDELEDSTFPASPVVGIGTRMSARLRHVQPAVNVDQSYEALKRTKKITEVHAEDKSQDSVLPKSFQEHQPDDTDAKSLESMSMEGNMHETDPADGNSSEDVTVLDDEFSREVESVKERFVKRSENFSIPQLERLYTRIMKGVFETKNKRVNGDLKSSVLKFLLNFLEDDANF* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 266 290 - -
Pvu11g0563 1193 SMART bromo_6 896 1003 IPR001487 GO:0005515
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 166 223 - -
Pvu11g0563 1193 Pfam Bromodomain 906 977 IPR001487 GO:0005515
Pvu11g0563 1193 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Pvu11g0563 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 913 IPR027417 -
Pvu11g0563 1193 Pfam AAA+ lid domain 578 615 IPR041569 -
Pvu11g0563 1193 SUPERFAMILY Bromodomain 894 1007 IPR036427 GO:0005515
Pvu11g0563 1193 Gene3D - 684 843 IPR027417 -
Pvu11g0563 1193 PANTHER BNAC08G44480D PROTEIN 1 1187 - -
Pvu11g0563 1193 Gene3D - 888 1016 IPR036427 GO:0005515
Pvu11g0563 1193 PANTHER AAA DOMAIN-CONTAINING 1 1187 IPR045199 -
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 1 27 - -
Pvu11g0563 1193 SMART AAA_5 412 553 IPR003593 -
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 66 80 - -
Pvu11g0563 1193 CDD AAA 412 551 - -
Pvu11g0563 1193 Pfam ATPase family associated with various cellular activities (AAA) 416 550 IPR003959 GO:0005524|GO:0016887
Pvu11g0563 1193 Gene3D - 552 637 - -
Pvu11g0563 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 119 165 - -
Pvu11g0563 1193 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 61 86 - -
Pvu11g0563 1193 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Pvu11g0563 1193 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Pvu11g0563 1193 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 118 235 - -
Pvu11g0563 1193 MobiDBLite consensus disorder prediction 1070 1097 - -
Pvu11g0563 1193 CDD Bromo_AAA 896 1005 - -
Pvu11g0563 1193 Gene3D - 374 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0563 Pvu-Chr11 4675711 4683904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0563 362 616 Calmodulin-binding Proteins AT3G56690 36.293 7.75e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0563 K22531 - gmx:100787765 2085.07