Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0554 GCTGTTCTCTCTGTAGCACGGAACAGAGGATTAAAAATAATTAGCGGCATCACACACCGTTTCTGCCACAATCCAAATTTCATGGAGTTTGAGATTGACAGTACTTGCGAGACAGTAGCAAATGCTGGTATAGGTGAGAGTAGTAGCATTGCTGATGACAGCAGAGAAGGTGGAAGTTTTGTTGAACCAAATTACAAACAAGATGAAGGTGATAATGTTCCTCAAGATTCCTCTGGGATCACTATCCCATTTGCAATTCCCACAGTATCAGTTGTTGCGATTGAAGAGCCGTATGTGGGTCAGGAGTTTGAGACAGAATCAGCAGCACACGCATTTTATAATGCATATGCCACAGATGTTGGATTCATCGTTCGTGTGAGTAAACTCTCTCGATCAAGGCGTGATGGAACTGCTATTGGACGTGCTCTTGTTTGCAACAAAGAAGGTTTCAGAATGCCTGACAAGCGTGAAAAGATAGTGAGGCAAAGGGCTGAGACCAGGGTTGGTTGCAGGGCAATGATAATGGTGAGGAAAGTCAGTTCTGGCAAATGGGTTGTTACAAAGCTTGTAAAGGAACATACACATCCTTTGACTCCTGGTAAAGGCAGAAGGGATTTCGTTTATGAACAATTTCCGAATGAACATGACAAAATTCGGGAACTTTCTCAGCAGTTGGCAACTGAGAAAAGGCGATCTGCAACCTATAAAAGACATCTTGAACTGATATTTGAGCATATTGATGAGCATAACGAGAGTCTTTCAAAGAAAATACAGCACATAGTAGGGAGTGTGAGGGAGATGGAAACCAAAGAAGAACAGAATAAACTGTGA 831 0.4236 AVLSVARNRGLKIISGITHRFCHNPNFMEFEIDSTCETVANAGIGESSSIADDSREGGSFVEPNYKQDEGDNVPQDSSGITIPFAIPTVSVVAIEEPYVGQEFETESAAHAFYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTPGKGRRDFVYEQFPNEHDKIRELSQQLATEKRRSATYKRHLELIFEHIDEHNESLSKKIQHIVGSVREMETKEEQNKL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0554 276 Pfam FAR1 DNA-binding domain 112 198 IPR004330 -
Pvu11g0554 276 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 273 - -
Pvu11g0554 276 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 27 273 - -
Pvu11g0554 276 MobiDBLite consensus disorder prediction 47 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0554 Pvu-Chr11 4578635 4581159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu11g0554 FAR1 2.1e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0554 - - pvu:PHAVU_011G054000g 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1579 5 38005667 38008643 Pvu11g0554 11 4578635 4581159 PCT