Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0551 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGTGTTGTGTGCCAAATGTGACGTTGAAGTGCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAGGACAAGGCAGCTTTCATATTTTGTGTTGAGGATAGAGCACTCTTCTGTAAAGACTGTGACGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTACTTGCACCAAAGGCAATGAAAAAGGTCATCATGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTGCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGCTCAGAAGCAGTCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTAGGTCTTTTTGGTGAACAGTTCCCTGAGGAACCTTTAGCCGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACTAGCAATGTTACCTCACAGAAAGCTTCTAAATCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGCCCTGGATGAAGATGATGAGGAACACTTCACTGTTCCTGATCTAGGCTAG 726 0.4559 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSTCTKGNEKGHHVEPSNPNAQEVPVKVPSQQVPSCTSSWAVDDLLELTDFESPDKAQKQSLEFGELEWLADVGLFGEQFPEEPLAAAEVPQLPVTHTSNVTSQKASKSFMSYKKPRIEALDEDDEEHFTVPDLG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0551 241 CDD Bbox1_BBX-like 57 98 - -
Pvu11g0551 241 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu11g0551 241 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Pvu11g0551 241 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Pvu11g0551 241 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 241 - -
Pvu11g0551 241 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 241 - -
Pvu11g0551 241 CDD Bbox1_BBX-like 5 47 - -
Pvu11g0551 241 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pvu11g0551 241 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pvu11g0551 241 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu11g0551 241 Gene3D Classic Zinc Finger 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0551 Pvu-Chr11 4560575 4563814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0551 1 162 Orphan Transcription Factor Family AT1G06040 68.639 1.00e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu11g0551 zf-B_box 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0551 - - gmx:732574 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1582 5 38024013 38026445 Pvu11g0551 11 4560575 4563814 PCT