Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0549 ATGGATAGAGACAGAGACAACAAATCCCCTCCTCTGCCGCCTTCATCTTCCTCGTCCCAACCTTTCAGCCACGACATCGTCGGAATGCCCGATAATCCGCCCAAAAACAGGGGCCACAGACGCGCCCATTCCGAGATTATCACCCTTCCCGATGACCTCACCTTCGACACTGATCTCGCCCTCGATGATGACTTCCTCGCCCTCGTAGATCATCTCAATTCCCCTCCGTTGCCTGAAGATAACAACAAGAACATCGGCAACAACAATAATTACAGCAGCAGCAATAACGATTACGGCGTTGCTACTGAAAGGCCGAGGGTTAGACACCAACATAGCCATTCCATGGATTTGTCCATCCAGCCGGATATGCTGATCTCCGGCGCCGATGACGTTGCTGGCTTGGATGCCAAAAAGGCTATGTCGGCTGACAAGCTTGCTGAGCTTGCCTTAATTGATCCCAAGCGGGCTAAAAGGATATGGGCAAACCGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCCGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAATTAACTCTTTTGCAGAGAGATACAAACGGACTGAATGCTGAGAACGGTGAGTTGAAGTTGCGGTTGCAAACCATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAATTAATGACTGGACAAGCCATTCCAAATGGAGGATCTACAAACTTTGCTTCGTTTGGTGGGGGGCAACAATTCTATCCCAACAATCACGCCATGTACACTCTTTTAGCTGCACAAAAGTTTCAACAGCTTCAAATTCAATCCCAGAAGCAGCAGCAGCATCAACTTCAGCAGCAACAACAACAGTTTCAGCAACATCAACTTCAGCATCAACTACAACAGCAACAGCAGAAACAAACAACAGCAACAAGTACTGTAACATCAACAAATGGGGCACTTGAATAG 1014 0.4655 MDRDRDNKSPPLPPSSSSSQPFSHDIVGMPDNPPKNRGHRRAHSEIITLPDDLTFDTDLALDDDFLALVDHLNSPPLPEDNNKNIGNNNNYSSSNNDYGVATERPRVRHQHSHSMDLSIQPDMLISGADDVAGLDAKKAMSADKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLNAENGELKLRLQTMEQQVHLQDALNDALKEEIQHLKLMTGQAIPNGGSTNFASFGGGQQFYPNNHAMYTLLAAQKFQQLQIQSQKQQQHQLQQQQQQFQQHQLQHQLQQQQQKQTTATSTVTSTNGALE* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0549 337 MobiDBLite consensus disorder prediction 10 25 - -
Pvu11g0549 337 SMART brlzneu 150 214 IPR004827 GO:0003700|GO:0006355
Pvu11g0549 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 152 215 IPR004827 GO:0003700|GO:0006355
Pvu11g0549 337 Coils Coil 170 239 - -
Pvu11g0549 337 Gene3D - 153 206 - -
Pvu11g0549 337 MobiDBLite consensus disorder prediction 1 41 - -
Pvu11g0549 337 CDD bZIP_plant_RF2 155 204 IPR044759 GO:0003700|GO:0006355
Pvu11g0549 337 SUPERFAMILY Leucine zipper domain 154 205 IPR046347 GO:0003700|GO:0006355
Pvu11g0549 337 Coils Coil 289 319 - -
Pvu11g0549 337 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 93 324 - -
Pvu11g0549 337 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 16 59 - -
Pvu11g0549 337 MobiDBLite consensus disorder prediction 77 93 - -
Pvu11g0549 337 Pfam bZIP transcription factor 154 208 IPR004827 GO:0003700|GO:0006355
Pvu11g0549 337 MobiDBLite consensus disorder prediction 74 93 - -
Pvu11g0549 337 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 16 59 - -
Pvu11g0549 337 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 93 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0549 Pvu-Chr11 4546245 4551062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0549 10 281 bZIP Transcription Factor Family AT1G06070 64.026 2.93e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu11g0549 bZIP_1 5.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0549 - - vun:114169967 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1586 5 38046607 38050487 Pvu11g0549 11 4546245 4551062 PCT