Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0547 ATGCCACTTCCAGCGAAACCAATGAGGGATTCCGACGAGTCCTCGAGCCCTTCCAACAACCTGTGGGTGGGGAATCTGGCGCCGGATGTCACCGACGCCGATCTCATGGAACTTTTCGCCAAATACGGCGCACTCGACAGCGTCACCTCTTATTCCGCTCGCAGTTACGCCTTCGTCTTCTTCAAGCGCGTCGAAGATGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCAAACAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTTGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGTAATACTGCATGTGTTGAATTTTTCAATTTAGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGGGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAAGCTACAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGCCAGAAAAGACCACTGCATTCACAGCCTCCAATGGGGAGGAAAGGCGATGGTCAACCAAGTAATGTGTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATAAACAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTATTGTAGAGTTTAGAAGTGTTGATGAAGCCCGACGTGCAAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAATGATCTAGTACATGGCAGTGATTACCCTGGCTTTTCTTCTGGAAGTAATGGACCAAGGTCCGATGTATTGCTGAATGAGCATCCATTCCGACCGTTACAAATAGATGCATTTAGTCATAATCGTCCAATGGTTCCAAATAATTTTACTGGTCAGTTACCGCCTAGCGGTATTATGGGTCCAAATGTACCAATGCGACCTTTTGGTCCTCACAGCGGTGTTGACACTGTTATTTCTGGTCCTGAGTTTAATGAGATTAATGCCCTCCACAAATTTCAGGATGTAATCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTCCTAGGCATCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATGGATGATCGGGGATTAGCCCTGGAGCAATCTTATGGGATGGATCCATCAGTTGATGGAGGTAGCTCTGGTCCCTATGCAAACATTCAAGGAAAGAGTCACCTTGGTCCAATGAACTCAAGGATTACAGCTGGAGTACGTGGTACGGTCCAACCTGATAGTGATCATATTTGGCGTGGAATTATTGCAAAAGGCGGAACTCCTGTTTGCCGTGCTAGATGTATACCAATTGGGAAAGGGATTGGGTCTGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTGAGTGGACCTGAGCGATTGTATGGTGTGGTTCTGAAGTTTCCTCAATTGCCAAGTAATGCACCTATGCAACAACCATCGAACTTGCCTGTACCAACAAGTCAGTATATGCAGCAAATTCCTCCTTCACAGACTGAATATGGTTTGATTCCTATGAAAGAGGAACAGGTTTTGTCAATGGATTATAGCAGACCATTGCATGAGGATTCTATGCTTCCTACTAAACCAGTCTACCCACCTGCAGGTGGGCCTCCTTCAGTTCATTCTGTGCCTTCAGATTATGCTCCTATTAATGGTGTTGCTGGGTCCCAAGCAGGAGTTGCATTAACGCCTGAGCTGATTGCAACTCTAGCTTCTTTTCTCCCTACAACTGCACCATTATCTGCCACTGATGGTGCCAAGCCTGGAGTGGGTTCCTCCACCATGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAGGATAATCAAATTGCTGATCAAACCACTCATCCTCCTCAACAGTTGAGGAGTATGTATAACGTTCAGAATGCTCACTATCAGCACTATCCACCAGCATCTGCTCCAGGTGGCAATCCTACTCAAGTGGTCTCTAGTAGTTCTCATATCCAAGATACTACAGCCACCATGCATCAGCAAGGTGCTGTTTTATCTAGACACATGCCTAATTTCATGATGCCCACTCAAAGTGGACAAGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAAGTTGAAGCCTCCCCCAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAACAACCTAATAACAATTCACTGCCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCCAATTCTTCACAGCAGCAGACAGCCATGCCATATACAGTAGACCAAGTAAACCCAGACACCCCCAATCAGCAACTTTCTGTTTTTGGAGTCGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAATCAGAGGTACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCCCGGGAGGGCATGGACCAGGAATTCAATAA 3000 0.4473 MPLPAKPMRDSDESSSPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKANKQLWVGGISPAVTKEELEAEFCKIGKIEDFKFYRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQATKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQPPMGRKGDGQPSNVLWIGYPPAVQIDKQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFSSGSNGPRSDVLLNEHPFRPLQIDAFSHNRPMVPNNFTGQLPPSGIMGPNVPMRPFGPHSGVDTVISGPEFNEINALHKFQDVISKSNMGPNWKRPSPPAPGMLSSPAPGPRHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNMDDRGLALEQSYGMDPSVDGGSSGPYANIQGKSHLGPMNSRITAGVRGTVQPDSDHIWRGIIAKGGTPVCRARCIPIGKGIGSELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQLPSNAPMQQPSNLPVPTSQYMQQIPPSQTEYGLIPMKEEQVLSMDYSRPLHEDSMLPTKPVYPPAGGPPSVHSVPSDYAPINGVAGSQAGVALTPELIATLASFLPTTAPLSATDGAKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDNQIADQTTHPPQQLRSMYNVQNAHYQHYPPASAPGGNPTQVVSSSSHIQDTTATMHQQGAVLSRHMPNFMMPTQSGQVAASPHGSQHYQVEASPSNQKGFGVVQGTDASVLYNSQAFQQPNNNSLPFQQPNNSIALTNQVSGANSSQQQTAMPYTVDQVNPDTPNQQLSVFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGPGIQ* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0547 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Pvu11g0547 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Pvu11g0547 999 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Pvu11g0547 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Pvu11g0547 999 Gene3D - 210 301 IPR012677 -
Pvu11g0547 999 MobiDBLite consensus disorder prediction 388 420 - -
Pvu11g0547 999 Pfam SPOC domain 506 623 IPR012921 -
Pvu11g0547 999 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0547 999 MobiDBLite consensus disorder prediction 187 214 - -
Pvu11g0547 999 CDD RRM3_Spen 98 167 - -
Pvu11g0547 999 SMART rrm1_1 97 164 IPR000504 GO:0003723
Pvu11g0547 999 SMART rrm1_1 20 87 IPR000504 GO:0003723
Pvu11g0547 999 SMART rrm1_1 217 285 IPR000504 GO:0003723
Pvu11g0547 999 MobiDBLite consensus disorder prediction 394 408 - -
Pvu11g0547 999 SUPERFAMILY RNA-binding domain, RBD 6 93 IPR035979 GO:0003676
Pvu11g0547 999 CDD RRM3_Spen 21 90 - -
Pvu11g0547 999 Gene3D - 94 175 IPR012677 -
Pvu11g0547 999 Gene3D - 5 93 IPR012677 -
Pvu11g0547 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Pvu11g0547 999 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 997 - -
Pvu11g0547 999 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 997 - -
Pvu11g0547 999 MobiDBLite consensus disorder prediction 433 452 - -
Pvu11g0547 999 MobiDBLite consensus disorder prediction 749 775 - -
Pvu11g0547 999 SUPERFAMILY RNA-binding domain, RBD 96 287 IPR035979 GO:0003676
Pvu11g0547 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Pvu11g0547 999 CDD RRM3_Spen 218 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0547 Pvu-Chr11 4526035 4532862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0547 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 22.695 1.75e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0547 - - gmx:100777570 1784.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1587 5 38052731 38067609 Pvu11g0547 11 4526035 4532862 PCT