Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0534 ATGGAAGATCATTTTTGCCCTAAGGGGAATGAAACTGGCTATTGCACCTCTCCTGGGGCCCAGTTGGAGGAATCAACATCGGTTGATGGTGGAATGAAAAAATCTGCTTCAGAAGACATGTTTAGTAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAACAATAGCTCATGTATGACTTATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCATCATACCCTCCCTCCGAGGGATTGAATTTGGTGGAACATGGCAATGGTCCATGCTTCATGACAGAAGTTAGTGAAATTCACAGTGGTATGGAAAGTTCTCCTAGTTGTGAGGAGAGAGGTATATTTCAGCAAATGGACATCCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAACAGCTTTGATTCAAAGCAAAATCGTAATGGTACATATCAGCAACTTAATACCTCAGACATGTGCAATTACTTAATCTCAAGGTCATCAGGTAGGCCACTTGATGATAGAATATTGAGGGCTTTGTCCTTCTTTATGGAATCAGTTGATGGGGAAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTACCGAGAGGTGTCAAGGGCATTCACATTTTCTGCAGAGGGAAAGAAAGGATCATGTCCAGGGCTTCCTGCTCGAGTGTTTATATCACATGTTCCTGAATGGACTTCCAATGTTGGTTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATTTCCGATCTGCATTCTCTAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAGAAACCGAATTTTGACAGAGAACTAGAAATTGTTACTCATGCACTCCAGCTTGTAAATTTAAAGACCATTACGCCTCCACGACTTCTTCCCCAGAGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATACTTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCACTAGCACTGACATGGATTCCCTGTAGTTACAGTGAGGGATTAGGGGATGAATCTGAGAGAATACAAATCAAAGAAGGTCATACAAGTTCTAATGAAAAATGTGTGTTATGTATTGAGGAATCAGCTTGCTATATAAATGATGGAGCACTGGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGACAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTGAGGAGTACCTATACTAATGATGATGATTACATATTAGAATTCTTTCTGCCGGTGACCATGACAGGGAGTTCAGAACAACAACTTTTATTGGATAATCTCTCAGGTACCATGCGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATGCTGAGTTAACAGGAATAGAAGGATCCGTAGCTGAGTTTCCAAAGGAAAAAGCCACATATTTTTTTCCCATGTCCAAAAGAAACTCTCAGATAGCATTTATAAATGATGATCATGATTCGGTCCAGAAAATGTCCTTGAAAGCATCTAACAATGGGATAGAAGCTGTTCATAGCCAGGTAGTGAATGGATCAAGAAAACAGATTGAGAAAAAGAGAAGCACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAGTACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAACGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGCTTATAGCTGGAGGATCAATAATGCAAGAAATTGACACACATAAATATATTCTGTTTCCTGAGAAAAGTGCTGTGAAAGACCCTAAGCATGCAACACAAAAACCAGTCTCAGTAGTTCCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATAATGATGATGGTGTTTGTTTGGTGGGAAACAAGCTTGTGCATTCAAGAAGTGTACTTATATCTGATACCAGTGAGGGAGGATTGAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGGCAGCAAACGGGCCAAGAATCAGGATTGCCCTGATCAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGAGTAGATGGGGGAGAGGGAATTGATGAACACAACCACCTTAATTCTTCAAGCACTACACACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCACGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAATCAACTTGTGTTCATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGATGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCAGGAATGTATAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTCGTGGCAGCAACAATTGCTTCTTGTCAGACAGTTCATAG 2907 0.4069 MEDHFCPKGNETGYCTSPGAQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWNNSSCMTYQSLANVFSSFSSASYPPSEGLNLVEHGNGPCFMTEVSEIHSGMESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQNRNGTYQQLNTSDMCNYLISRSSGRPLDDRILRALSFFMESVDGEMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLDHALNHEIRGSIALPISDLHSLVPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTITPPRLLPQSLSSNKRAALTEILDVLRAVCHAHRLPLALTWIPCSYSEGLGDESERIQIKEGHTSSNEKCVLCIEESACYINDGALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVTMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAELTGIEGSVAEFPKEKATYFFPMSKRNSQIAFINDDHDSVQKMSLKASNNGIEAVHSQVVNGSRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGLIAGGSIMQEIDTHKYILFPEKSAVKDPKHATQKPVSVVPAPGSTSENSTIKLDNDDGVCLVGNKLVHSRSVLISDTSEGGLKKDNASSDDCCEDSKSVAMNDGSSQKGSKRAKNQDCPDQTCSISLVTDEVEVGVDGGEGIDEHNHLNSSSTTHSSNGSGSMMHGSSSRSQSFENQKHSKVKSTCVHSGSKMIVKASYRGDTIRFKFDPSAGCFQLYDEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECIEILDDIGTRCVKFLVRDVPCVLSSRGSNNCFLSDSS* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0534 968 MobiDBLite consensus disorder prediction 754 796 - -
Pvu11g0534 968 MobiDBLite consensus disorder prediction 813 852 - -
Pvu11g0534 968 SUPERFAMILY CAD & PB1 domains 862 952 - -
Pvu11g0534 968 MobiDBLite consensus disorder prediction 769 796 - -
Pvu11g0534 968 CDD PB1_NLP 869 949 IPR034891 -
Pvu11g0534 968 Pfam RWP-RK domain 599 647 IPR003035 -
Pvu11g0534 968 ProSiteProfiles RWP-RK domain profile. 586 667 IPR003035 -
Pvu11g0534 968 PANTHER PROTEIN NLP8 5 964 IPR045012 GO:0003700
Pvu11g0534 968 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 964 - -
Pvu11g0534 968 Gene3D - 865 947 - -
Pvu11g0534 968 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Pvu11g0534 968 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Pvu11g0534 968 SMART PB1_new 868 950 IPR000270 GO:0005515
Pvu11g0534 968 MobiDBLite consensus disorder prediction 821 852 - -
Pvu11g0534 968 MobiDBLite consensus disorder prediction 704 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0534 Pvu-Chr11 4430033 4435886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0534 1 964 NLP Transcription Factor Family AT2G43500 49.389 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu11g0534 PB1 1.8e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0534 - - gmx:100793770 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1598 5 38167840 38178215 Pvu11g0534 11 4430033 4435886 PCT