Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0521 ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCATACAAGGAAATGGCAGGGAGACTTGGCAGATGGATTATTATCAAGGCAATCCAGTCTTCTTCATCATTGTCAACAACACTAAGTTACAGAAAGTCCCAGAGGGGTTTCTGAAGCATTTGAATGAAGACTTGCCAAATGCAGTTCTTGTTAGTCCTACTGGTGATAACTGGCAAATAACTATTTTGAAGAAAGGAAATAACATGTATATGCAAAGTGGTTGGCCACAATTTCTGACAGACAACTCAGTGATGCTTGATGATTTCTTGCTCTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATCTTTGGTAAGAATGGATTGGAGAGGCTGTGTTTCAAACAAACAAGACAGGATCAAGTTCTGATTCCAAGTTTGGTGAGGACAAAAAAGAGCACACAGAGAAGAACTTTTTCCAGTTCATTCCTCCACCAAGCCAAGTCTTGTAAAAAAGGTCTGTCTTTCAGCAACAAAATCTCATTTTCTAAGGACTTCCAAAAGCTCAAGAGCTCAATTAAGATTGAAAGCACAGAAGCCTGCAACTTGGCAGACTCTTTTACCTCTCGCAATCCTCATTGGAAGCATCTCATGACAAAATGCAATGTAGAAGATCACTGCACATTGCCAATTGCCACGGAGTTTGCCAGGAAGCATATTCCTGAAGCAGTGAAACAGATCATTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAGAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACCTGCATATTTGAACTTGAAGATGAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTATGTGCACCAAGACTGTTTTAA 939 0.3919 MTMRDFSFYQKALIIQGNGRETWQMDYYQGNPVFFIIVNNTKLQKVPEGFLKHLNEDLPNAVLVSPTGDNWQITILKKGNNMYMQSGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKSTQRRTFSSSFLHQAKSCKKGLSFSNKISFSKDFQKLKSSIKIESTEACNLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPEAVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDENHLSVHIFRTGLCAPRLF* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0521 312 Pfam B3 DNA binding domain 211 304 IPR003340 GO:0003677
Pvu11g0521 312 Pfam B3 DNA binding domain 42 120 IPR003340 GO:0003677
Pvu11g0521 312 CDD B3_DNA 32 118 IPR003340 GO:0003677
Pvu11g0521 312 ProSiteProfiles B3 DNA-binding domain profile. 208 305 IPR003340 GO:0003677
Pvu11g0521 312 ProSiteProfiles B3 DNA-binding domain profile. 46 121 IPR003340 GO:0003677
Pvu11g0521 312 Gene3D - 187 305 IPR015300 -
Pvu11g0521 312 CDD B3_DNA 212 303 IPR003340 GO:0003677
Pvu11g0521 312 PANTHER B3 DOMAIN-CONTAINING 31 307 - -
Pvu11g0521 312 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 31 307 - -
Pvu11g0521 312 SMART B3_2 208 305 IPR003340 GO:0003677
Pvu11g0521 312 SMART B3_2 34 121 IPR003340 GO:0003677
Pvu11g0521 312 Gene3D - 28 122 IPR015300 -
Pvu11g0521 312 SUPERFAMILY DNA-binding pseudobarrel domain 203 307 IPR015300 -
Pvu11g0521 312 SUPERFAMILY DNA-binding pseudobarrel domain 30 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0521 Pvu-Chr11 4351357 4353334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0521 31 301 B3 DNA Binding Superfamily AT5G18090 26.190 3.41e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu11g0521 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0521 - - var:108340235 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0521 11 4351357 4353334 Pvu11g0521 11 4351357 4353334 ECH