Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0520 ATGACTAGTGGTGCCAAGAAATACCCTCACTTCTTCAAAATCTTCCTTCCAGAGCAAGATTCTCACATAATGAAAGTTCCAAAGGAGTTTTTGAAGCACTTGGATGAAGACTTGTCGAGTAATGCTGTTCTTAGTGGCCCTTCTTCTGGTGAGCAGTGGCAAGTAAGTGTTCTGAAGAAAGGAAATGATGTGTATATGCAAAATGGTTGGCCAGAATTTGTGACAGACAACTTAGTAGTGCTTAATGAGTTCTTGCTTTTCACATATCATGGAGACAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGTTATGCCTCAGAGAAACAAGACAAGAACAAGCTGCTGCCATCCCAAAGAACAGTACACAAACTTTTGCAGGTTTATCCCCTCATAAGTCCAAGTCTTGTAAAAGAGATACGCCTTTCAGCAACAAAGACTTTATTTTTACTGGATGTGAGACAATGGAAACAAGACAAAAACAAACTGCCACCCCAAGTTTGGCAACAACAAAGAAGAACAAAGAAAGAAAGTTTTCTCCTGGTGCATCACACCTCCAAGAATCTAAGTCTTATCAACAAGATTTGTCCTTCAGCAACAAAGCCTCTCTTCCGAAGGACTTCCCAACTCCTCAGCATTCAATTGAAATTGAAAGTTCGAAAGCATGGAAATTGGCCGAGTCCTTTACCTCTTGCAATCCTCATTGGAAGCACCTCATGACAAAATCTAATGTGGAAGATTGTTGCATATTGCCTATTGCTACTGAGTTTGCTAGAAAGTATATTCCTGAAGCAGTGAAACAGATCCACATTGGAAATTGTAAAGGAACATCTTGGAAAGTGCAAGTGAATTGTTTCAAAAATCAAGATAGAAGATATGCTCAGTTAACAACAGGATGGGTAAATTTCGTTCGTGAAAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAGACTTCCATTTTAGGGTTCACATATTCAGAACCAGTTGTGCACCACGTTAA 1023 0.3939 MTSGAKKYPHFFKIFLPEQDSHIMKVPKEFLKHLDEDLSSNAVLSGPSSGEQWQVSVLKKGNDVYMQNGWPEFVTDNLVVLNEFLLFTYHGDNCFHVQIFGKNGLERLCLRETRQEQAAAIPKNSTQTFAGLSPHKSKSCKRDTPFSNKDFIFTGCETMETRQKQTATPSLATTKKNKERKFSPGASHLQESKSYQQDLSFSNKASLPKDFPTPQHSIEIESSKAWKLAESFTSCNPHWKHLMTKSNVEDCCILPIATEFARKYIPEAVKQIHIGNCKGTSWKVQVNCFKNQDRRYAQLTTGWVNFVRENKLMRGDTCIFELEEDFHFRVHIFRTSCAPR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0520 340 MobiDBLite consensus disorder prediction 163 193 - -
Pvu11g0520 340 ProSiteProfiles B3 DNA-binding domain profile. 24 103 IPR003340 GO:0003677
Pvu11g0520 340 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 6 336 - -
Pvu11g0520 340 SUPERFAMILY DNA-binding pseudobarrel domain 7 104 IPR015300 -
Pvu11g0520 340 CDD B3_DNA 9 100 IPR003340 GO:0003677
Pvu11g0520 340 SMART B3_2 239 336 IPR003340 GO:0003677
Pvu11g0520 340 SMART B3_2 11 103 IPR003340 GO:0003677
Pvu11g0520 340 ProSiteProfiles B3 DNA-binding domain profile. 239 336 IPR003340 GO:0003677
Pvu11g0520 340 SUPERFAMILY DNA-binding pseudobarrel domain 232 337 IPR015300 -
Pvu11g0520 340 CDD B3_DNA 243 334 IPR003340 GO:0003677
Pvu11g0520 340 Gene3D - 3 104 IPR015300 -
Pvu11g0520 340 PANTHER B3 DOMAIN-CONTAINING 6 336 - -
Pvu11g0520 340 Gene3D - 218 336 IPR015300 -
Pvu11g0520 340 Pfam B3 DNA binding domain 242 335 IPR003340 GO:0003677
Pvu11g0520 340 Pfam B3 DNA binding domain 11 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0520 Pvu-Chr11 4343040 4348059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0520 9 336 B3 DNA Binding Superfamily AT3G18990 24.928 1.22e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu11g0520 B3 4.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0520 - - pvu:PHAVU_011G050700g 711.835