Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0519 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTCCCTTCCACTCTCCAACCCAACCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGGAGGGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTATTGGTTCCTTGATGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGGGTTGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATGCGATGTAGTAATGAAGGGCCTCACTTTGCAAATCTACTTAAATTTTTTGAAGAAATGGATGATGAAGATTCTATTGAAATCTTGGATTCATCACCATCCCATCTTGCTCCCAGTTCATTGCAAAATAAAGTTCTTGCTGGATCAGTCGATAAAATGTCGCCTGCCAAGTGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTGATGCGCATTGTTCGAAAAGTGTCAATTCCCTGGATAATCTATTGACAAGAGACATAGGAGTTCAATTTAATGCAGTTGAGTTTAAAAAATCTACTGAAGAATTGAAATTGCGTGCTTCCATGGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGAGGGACAGGAAGCCTCTGCTGAACAAGAAGAGGAAGTTGAAATGCGCTTTAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCGAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTTCTAAGGCCCTCCTATCTATACAGAGGATGCATAATGTATCTGCCATCTTGTTTTGCAGAAAAACATTTGAATGGAGTTTCGGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTAGCATCTTTCGCATTACTGAGGATGTGGGATTGTTGAGCCCTCCTCCTTTGCAGCAGAATCAAAAGATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACACCTTACTTCAACTAAAATAATTAGAAATTAG 1293 0.4099 MTHPSFHKLLLPSTLQPNQLRLPDDFMRKYGRELSPIVTLSVPDGSVWRVGLKKADNKYWFLDGWQEFIQHYSIGVGYLLVFRYEGKSSFNVHVFNLATSEINYQSAMRCSNEGPHFANLLKFFEEMDDEDSIEILDSSPSHLAPSSLQNKVLAGSVDKMSPAKCYTPPALQNLFNGSKLNSINWGEGGDAHCSKSVNSLDNLLTRDIGVQFNAVEFKKSTEELKLRASMEERMKKTARKKRKSEGQEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVSIFRITEDVGLLSPPPLQQNQKMSSAKLLNTPLQQHLTSTKIIRN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0519 430 MobiDBLite consensus disorder prediction 233 254 - -
Pvu11g0519 430 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Pvu11g0519 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pvu11g0519 430 Coils Coil 227 247 - -
Pvu11g0519 430 SMART B3_2 6 98 IPR003340 GO:0003677
Pvu11g0519 430 SMART B3_2 296 391 IPR003340 GO:0003677
Pvu11g0519 430 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Pvu11g0519 430 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Pvu11g0519 430 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 420 - -
Pvu11g0519 430 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Pvu11g0519 430 CDD B3_DNA 294 389 IPR003340 GO:0003677
Pvu11g0519 430 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Pvu11g0519 430 Gene3D - 1 98 IPR015300 -
Pvu11g0519 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pvu11g0519 430 PANTHER B3 DOMAIN-CONTAINING 1 420 - -
Pvu11g0519 430 Gene3D - 273 393 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0519 Pvu-Chr11 4334473 4337965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0519 1 395 B3 DNA Binding Superfamily AT3G18990 51.250 8.73e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu11g0519 B3 6.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0519 - - var:108340232 760.755