Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0518 ATGAGTGGTGCGGAGAAGTACCCAGATTTCTTCAAAGTCTTCCTTCAAGAACAACACTACGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGCAAGGGTTACAGGGAAGGATCCCTGAGGATGTTCTCCTCAGGAATCGTAGTGAGAGAGTGTGGCATGTTAAAACACGTTTTTTTGGAGACAAATTATATTTTGATGATGGGTGGAAGATTTTCCATGAAGAAAACTGCTTAGGAAATGCTGATTTTCTAGTATTCAGATATGACGGGGTTAATGAGTTCAGGGTCACAATCCTTGAAATATCAACGCAGTGTGAGAAAACTCTGGTAAAGATTGAGGAGGAGGAGGAGGGGAATGAAGAAGAGAGAGCAGCTGCACAAGTTGAAGAGACAGTGATAACACAGGAGGAGCAAGCTGAGGACTGTGACATTGAGGACGAGGAAGACAGCCAGGATCAGGACTACGATGACGACAATGACGATAGTGATTTTGATGATCATGATCATGATGATGATGATGATGAGAACACAGAGATGGAAGAAGAGAGTGAAGAAGAAAACAGTGTTGGTCCTGTTGGATACGCGAGTCAACATTATCGCAAACCTTACAGAAGGGACACTGCATCAAGTTCCTACCCCCAGACTGAAGAAGACACTTTCAAAGACGATGAATTTGATCCTGAAATGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCCCTTAGTTTTCCTGAAAAGATTACCCTTAAATGTTGCCAACACTGCCAGCGTAAGGATATTCAAAGAAACCAATTGCAAGACTATCATCTCAACTTGGCACAACAGGCACCCATCAGAAAAAGATATTTAGAAGTGACAGGAAAAGTGTGTAGGTGGCAAGATGATAGAATATGTATCAAGGGTTGGGCTAACTTTAGCAGAAGAAACAAGATAAAAAATAATGATGTATGCATCTGTGAAGTTATATCAGGGGAAGACCAAGTAGTAAGAACCTTTCTGGTGCACGTTATTGGTACTAGGAGGGAATAG 1095 0.41 MSGAEKYPDFFKVFLQEQHYERMLIPNAFVKLQGLQGRIPEDVLLRNRSERVWHVKTRFFGDKLYFDDGWKIFHEENCLGNADFLVFRYDGVNEFRVTILEISTQCEKTLVKIEEEEEGNEEERAAAQVEETVITQEEQAEDCDIEDEEDSQDQDYDDDNDDSDFDDHDHDDDDDENTEMEEESEEENSVGPVGYASQHYRKPYRRDTASSSYPQTEEDTFKDDEFDPEMCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNQLQDYHLNLAQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISGEDQVVRTFLVHVIGTRRE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0518 364 Gene3D - 2 106 IPR015300 -
Pvu11g0518 364 MobiDBLite consensus disorder prediction 114 227 - -
Pvu11g0518 364 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Pvu11g0518 364 SUPERFAMILY DNA-binding pseudobarrel domain 309 360 IPR015300 -
Pvu11g0518 364 Coils Coil 110 132 - -
Pvu11g0518 364 MobiDBLite consensus disorder prediction 135 188 - -
Pvu11g0518 364 Gene3D - 222 361 IPR015300 -
Pvu11g0518 364 PANTHER B3 DOMAIN-CONTAINING 5 357 - -
Pvu11g0518 364 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 5 357 - -
Pvu11g0518 364 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Pvu11g0518 364 SMART B3_2 10 103 IPR003340 GO:0003677
Pvu11g0518 364 CDD B3_DNA 8 100 IPR003340 GO:0003677
Pvu11g0518 364 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0518 Pvu-Chr11 4329018 4332843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0518 1 358 B3 DNA Binding Superfamily AT3G06160 23.901 1.23e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu11g0518 B3 3.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0518 - - var:108340234 528.094