Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0505 ATGACTCCTTCTCAGCCACCCCATTGGGCCCCATCTTCATCTCCATCTCCAACCCCAACACCAATATTCAACAAATCATTCTTGCCACCACCATCCAACTCGCCGGCGGTTGACTTCAGCCCTCCCTTGATAGCAATGGTCGTAGTCGTCGCCGCCGCCTTTCTCGTCGTAACCTACTCCCGCCTCATCGCGCGCCACCTCAGGCCGCCACTTCACCGCCTTCTCCACCGCTTCCGGCGGCGGAGATTCCCTCCGTCTTCCGTCGGCGACCTCGAGTCCCTACCCTACGAGTCTCCCTTTGACGGCTCGCGCGTCTTCTCTCCCTATGGCTTAGACGAAACGGTGATTAAAACGATACCGTTTTCGCTTTACACCGCCAAATACGACGCGCGTTTCGAAGAGTCTCGCAACGACTGCGCCGTTTGCTTGCTGGAATTCGAAGACGAAGACTACGTGAGGACGCTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGATGCGTGGCTTCGATCGCACGCTAACTGCCCTCTCTGCCGCGCTGGAGTCCTCTGCGCCGATTCGCCTTTCACCCCGATGATGGCCGCAAGAATCCGACCAAGCCTCGACGACGACACAATTCTCCACCGCATTAGCTTAGACCCTCTCCTCGACCCCCCACTTCCTCTGGCAATATCCGCCGTGCCGGAGATAACGCCCTGCATCGACGAGCAATCTCCGAGGAGGAACCAGAACCAGAGCCACGCGAACGTTAACTCGGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTATTCGTTTGGGTTTGAACGGAGTGTCGCGTCGGAGAGGATGGTGATGGAAGCCGCCACTGCGTCGCCGTGGCGGTACCGAAGAGGGAGTAACAGTTTCTGGAGCAAGAGGCCGTCGCCGTTTGGGTCTCTGGGGAAACCGAGGGTGTTTTCATTTCGGTATTATAGAGGGATGAAATCACCGTTCTTCCGGCGGAGGGGATTCTTCCCGCTGTCGGAGTCCAGCGTGAGGTACGGCGGCGGCGGGAGCTCATCGCGGCGGAGCAAGTCGATTGCCAGCCCAATGTTTCTGCGGTCGTCGGGGCTGGCAGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTATCGCCGGAGAGATTTAACCGGAGGTGA 1188 0.5875 MTPSQPPHWAPSSSPSPTPTPIFNKSFLPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPLHRLLHRFRRRRFPPSSVGDLESLPYESPFDGSRVFSPYGLDETVIKTIPFSLYTAKYDARFEESRNDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCADSPFTPMMAARIRPSLDDDTILHRISLDPLLDPPLPLAISAVPEITPCIDEQSPRRNQNQSHANVNSEDCFRDFLLKRSYSFGFERSVASERMVMEAATASPWRYRRGSNSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGSSSRRSKSIASPMFLRSSGLAAAAFSSSRLRCGDPEALLSPERFNRR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0505 395 Pfam Ring finger domain 137 181 IPR001841 -
Pvu11g0505 395 SUPERFAMILY RING/U-box 123 186 - -
Pvu11g0505 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Pvu11g0505 395 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 368 - -
Pvu11g0505 395 CDD RING-H2_PA-TM-RING 138 181 - -
Pvu11g0505 395 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 368 IPR044675 -
Pvu11g0505 395 SMART ring_2 139 180 IPR001841 -
Pvu11g0505 395 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Pvu11g0505 395 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0505 Pvu-Chr11 4225506 4227641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0505 32 395 C3H Transcription Factor Family AT3G18930 51.372 7.39e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0505 - K19041 gmx:100806115 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0505 11 4225506 4227641 Pvu11g0505 11 4225506 4227641 ECH