Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0494 ATGGAGGATTATGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAAGATGACTCCGTCGAGGCTTATGAAAACGACGAGGATTACGCGTTGCTATCTTCCAAGGGTCCCACTACTAAGGTGATTACTAAGGAATCACTTTTGGTTGCACAGAAGGAGGATTTGCGCAGAGTGATGGAGATGCTATCGGTAAGAGAGCAACATGCTCGTACACTGCTAATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTAGTGTGGATCAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTTGAAACAACAAGAATGGACTGTGGTCATTGCTTTTGCAACTCCTGTTGGATTGAACATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTCGTTAGAACTTTACTCAGTAGAAAGCACCCTGGTATGGCAGAGAAATATGAACGTTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGCGAGGTAGAATGTTCATGTGGTTTACAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGCCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAACGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAATCGGCAGAACGTGCAAAGAGGGATCTATATCGGTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTTTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGACGCGCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCACCCTCTCAACAATTATTGATAAGCTTTGTCAGAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTTCATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCGGTTTGCTGGAACAACAAAGTCAATACTGGTGTAACAGCTGAACTTGATCGGCCTTCCGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGAGCTAGAAAAGATGGTCTTGGAGGTGGTTTTTTTGATCTAAACTTGCCGGCAGAGTTTATAGACAGGAATTGA 1737 0.4145 MEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVSVDQHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHPGMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGLQFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKSAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILTLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTGVTAELDRPSGSGSSDDNGCSSRKRARKDGLGGGFFDLNLPAEFIDRN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0494 578 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 513 IPR031127 GO:0004842|GO:0016567
Pvu11g0494 578 SUPERFAMILY RING/U-box 116 203 - -
Pvu11g0494 578 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0494 578 MobiDBLite consensus disorder prediction 534 555 - -
Pvu11g0494 578 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 513 - -
Pvu11g0494 578 SMART ibrneu5 261 326 IPR002867 -
Pvu11g0494 578 SMART ibrneu5 191 253 IPR002867 -
Pvu11g0494 578 SUPERFAMILY RING/U-box 261 318 - -
Pvu11g0494 578 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Pvu11g0494 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 206 IPR013083 -
Pvu11g0494 578 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Pvu11g0494 578 Gene3D - 248 496 - -
Pvu11g0494 578 SUPERFAMILY RING/U-box 191 259 - -
Pvu11g0494 578 MobiDBLite consensus disorder prediction 534 549 - -
Pvu11g0494 578 Pfam Ariadne domain 330 578 IPR045840 -
Pvu11g0494 578 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0494 Pvu-Chr11 4170711 4174459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0494 60 542 ARIADNE family AT2G16090 70.637 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0494 K11968 - gmx:100783343 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0494 11 4170711 4174459 Pvu11g0494 11 4170711 4174459 ECH