Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0462 ATGGCTGCAGCTGATGTTGAGTTTCGATGCTTCGTCGGTGGGCTCGCATGGGCCACCGACGGCGAAGCTCTGGAGAAGGCTTTCTCTAAATACGGGCCAGTCCTTGAATCCAAGATTATCAATGATCGTGAGACTGGAAGATCCAGGGGTTTCGGATTCGTGACCTTTTCCTCAGAGCAGGCCATGAGAGAAGCGATCGAAGGAATGAACGGTCAGAACCTTGACGGTCGTAACATCACTGTGAACGAAGCTCAGTCTCGCGGAGGAGGCGGAGGCGGCGGTGGCCGTGGAGGAGGCGGTTATGGAGGTGGTGGTGGATACAGCCGTGGCGGCGGCGGCTACGGTGGTGGTGGTGGAGGCGGCTACGGTGGTCGTCGTGAGGGAGGAGGAGGAGGAGGGTATAACCGCAGTGGTGGTTATGGTGGTGGTGGTGGTGGTTACGGTGGAGGCAGGGACCGTGGTTATGGTGATGGTGGGTCCCGCCACTCTCGTGGAGGCGATGGAGGAGATGGTAGCTGGAACTAG 525 0.5905 MAAADVEFRCFVGGLAWATDGEALEKAFSKYGPVLESKIINDRETGRSRGFGFVTFSSEQAMREAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGRGGGGYGGGGGYSRGGGGYGGGGGGGYGGRREGGGGGGYNRSGGYGGGGGGYGGGRDRGYGDGGSRHSRGGDGGDGSWN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0462 174 PANTHER GEO13361P1-RELATED 1 132 - -
Pvu11g0462 174 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Pvu11g0462 174 MobiDBLite consensus disorder prediction 71 174 - -
Pvu11g0462 174 Gene3D - 2 107 IPR012677 -
Pvu11g0462 174 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 132 - -
Pvu11g0462 174 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pvu11g0462 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pvu11g0462 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0462 Pvu-Chr11 3880909 3882030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0462 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 31.818 1.78e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0462 - K13195 ccaj:109800369 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0462 11 3880909 3882030 Pvu11g0462 11 3880909 3882030 ECH