Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0461 ATGGCCTCAAGCTCTATCAGCAAACAAAAGCCTTCTGACTCCTCTTGGACACCAAAACAGAACAAACTGTTTGAAAAAGCTCTTGCAAAATATGATAAGGATACCCCAGACCGGTGGCAGAATGTGGCCACAGCAGTAGGTGACAAATCTCCAGATGAGGTTAAGAGACACTATGAAATCCTCTTGGAGGACCTCAGACACATAGAGTCTGGCCATGTTCCTCTCCCCAAATACAGGTCCACTGGAAGCAGCACCAATGTTGATGATGAAGAGAGACTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4488 MASSSISKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVATAVGDKSPDEVKRHYEILLEDLRHIESGHVPLPKYRSTGSSTNVDDEERLLKYLKLN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0461 100 CDD SANT 15 62 IPR001005 -
Pvu11g0461 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Pvu11g0461 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Pvu11g0461 100 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g0461 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Pvu11g0461 100 Coils Coil 87 100 - -
Pvu11g0461 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Pvu11g0461 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Pvu11g0461 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Pvu11g0461 100 SMART sant 12 64 IPR001005 -
Pvu11g0461 100 Gene3D - 7 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0461 Pvu-Chr11 3874859 3876374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu11g0461 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0461 - - gmx:100785292 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0461 11 3874859 3876374 Pvu11g0461 11 3874859 3876374 ECH
Pvu11g0461 11 3874859 3876374 Pvu3g2619 3 48232266 48233623 ECH
Pvu11g0461 11 3874859 3876374 Pvu2g0321 2 3219506 3221207 ECH