Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0460 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTTTTGGAAAGACAAAGGGAAGCAACCATCAAGTGGCAACACCACCATCACGACAATCACCACCCTTACTTTTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTCCCAACAATCTTCCTCAGAGTCAGGGCTCGCTCATGGCGCGTGACGATTCCGCGCTTGCTCAGGTCTTGGCTCATTCTCTCAAACCCGACCCGGCTCTCTGCCCCGAACTCGACTCTGGATTCGGATCTTCTTCCGTTATTTTACCCAAGGAAAGCAACAAGAAGAGGAAGGCGCAGAACTTCAAGATTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTGAAAGTGAGTGGCGAGGAAGGAGAATCCAGAGTGACGCACCAGAGCAGCAACAGAAATGGCAAATCCAACGCAGTTAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGGATGATTCGAAAGCGTCCGAGGTTCAGAACCAGAAGCGCGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCCGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTATTTGCCAGAGAGGTGTTTCCTTCTTTATCTCAAGGTTTACCCAACATTGGGATGGCATCAGATATGAGAATGTGCAACAACCCTTCGTATCTTCAGTTGAATCCAACACAACCACATGGATCATGTTGTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCCAATATGGGACTTCGAAGGAACATTAGTACTACACATGTACCTTTGTCCGAAGCGTTTCTTGACTCCTCCTGTTTCACCCAAATTCTACCCTCTTCAAATTGGGAAGGTGATTTTCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGCGAGCAACATCCTTTCCTTCTCAACCATTTACAGGTGCAGTTGAAAGTAGCAATCCGAAGATGGAGATGTAA 1173 0.4578 MLHCLNGSGNLGASCSDMTVLERQREATIKWQHHHHDNHHPYFSATEFHVNLVFSSSPNNLPQSQGSLMARDDSALAQVLAHSLKPDPALCPELDSGFGSSSVILPKESNKKRKAQNFKIAAESDNKDKRVKVSGEEGESRVTHQSSNRNGKSNAVKNNRETSADSSKDDSKASEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSLSQGLPNIGMASDMRMCNNPSYLQLNPTQPHGSCCGGLINNVGISPPNMGLRRNISTTHVPLSEAFLDSSCFTQILPSSNWEGDFQSLYNVAFDQGRATSFPSQPFTGAVESSNPKMEM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0460 390 MobiDBLite consensus disorder prediction 144 161 - -
Pvu11g0460 390 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 106 371 IPR024097 GO:0006355
Pvu11g0460 390 Pfam Helix-loop-helix DNA-binding domain 196 243 IPR011598 GO:0046983
Pvu11g0460 390 MobiDBLite consensus disorder prediction 109 143 - -
Pvu11g0460 390 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 106 371 - -
Pvu11g0460 390 SMART finulus 198 248 IPR011598 GO:0046983
Pvu11g0460 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 242 IPR011598 GO:0046983
Pvu11g0460 390 CDD bHLH_AtBPE_like 182 261 - -
Pvu11g0460 390 MobiDBLite consensus disorder prediction 109 201 - -
Pvu11g0460 390 Gene3D - 189 263 IPR036638 GO:0046983
Pvu11g0460 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 262 IPR036638 GO:0046983
Pvu11g0460 390 MobiDBLite consensus disorder prediction 162 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0460 Pvu-Chr11 3861118 3864007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0460 5 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.442 5.10e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g0460 HLH 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0460 - - gmx:100794256 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0460 11 3861118 3864007 Pvu11g0460 11 3861118 3864007 ECH
Pvu11g0460 11 3861118 3864007 Pvu2g0295 2 2998186 3000661 ECH