Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0407 ATGGAAGTTGCGGCGGCGAAAGCGCTCAAACCGAGCTTGCGGACGGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTGTGTTTCAACGCGAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGACGTCTGCGAGGAAGAGGAAGACGAGGAAAAGGACAGCAGCTCCGGTTCCTTGCAGGACCGAATCGAAGACGACAGCAATTCCAATTCCGCCGCCTGCGGCGGCGGCGACTCCGTCTTTGCCGGGGAATTGTCAGTTCCTGCGGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTAGATGATTCTCTCCCTGAGCTATCTCTATTGTACCCTGTCCCTGCCGCGAAAACAAGGGTACGGACCGAACCAGAACCTAGACCGGGCCGGGCCCAAACGGCTTCAACGGTTCCCAAAAGGTTGAGAACCGAAAAGAGTAGAAAGCCCAACGCTCGGGTGTGGTCTTTTACTGTGTCGCCGCCGTTTTTGTGTTCTCCGGTGTTGGCTGGAGTTGAGTTTGGCGAACCCACGGCTAAAAAGCAGAAGAAAAAGGCTGAGGCCCAAAGTGGAACCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGGCCCAAAACACTCTGCAACGCTTGCGGAGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCATTAGCCCAACTTTTTCTGGCGAGATTCACTCAAATAGCCACCGGAAGGTGTTGGAGATGAGGCGAAGAAAGGAGACCACAGAACCGGTTCTGGAAACCGGTTCAGACCGGACTCAACTGGTCCCAAGCTGTTGA 912 0.5493 MEVAAAKALKPSLRTEFIFPQAICDEILCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVCEEEEDEEKDSSSGSLQDRIEDDSNSNSAACGGGDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPAAKTRVRTEPEPRPGRAQTASTVPKRLRTEKSRKPNARVWSFTVSPPFLCSPVLAGVEFGEPTAKKQKKKAEAQSGTQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPAISPTFSGEIHSNSHRKVLEMRRRKETTEPVLETGSDRTQLVPSC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0407 303 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Pvu11g0407 303 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Pvu11g0407 303 MobiDBLite consensus disorder prediction 64 93 - -
Pvu11g0407 303 MobiDBLite consensus disorder prediction 140 169 - -
Pvu11g0407 303 CDD ZnF_GATA 217 274 IPR000679 GO:0006355|GO:0043565
Pvu11g0407 303 MobiDBLite consensus disorder prediction 279 303 - -
Pvu11g0407 303 PIRSF Txn_fac_GATA_plant 1 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pvu11g0407 303 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Pvu11g0407 303 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Pvu11g0407 303 SMART GATA_3 212 262 IPR000679 GO:0006355|GO:0043565
Pvu11g0407 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Pvu11g0407 303 PANTHER GATA TRANSCRIPTION FACTOR 1 303 - -
Pvu11g0407 303 Gene3D - 211 262 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0407 Pvu-Chr11 3424122 3425804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0407 40 283 C2C2-Gata Transcription Factor Family AT4G36240 44.841 2.75e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu11g0407 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0407 - - gmx:100776188 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0407 11 3424122 3425804 Pvu11g0407 11 3424122 3425804 ECH
Pvu9g0039 9 717658 719313 Pvu11g0407 11 3424122 3425804 ECH