Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0359 ATGGGAAGATCCCCTTGCTGTGAGAAGGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTTATATCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGTGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCTGGGAGAACGGACAATGAAATAAAGAACTACTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCATAGACCTCTGAACGAAGCTGCTTCTTCTGCAACAGTTGTAACGGTTGCAACTGCCAGTAATATATCTTTCGGTAAACAAGAACAAGAGACAACAAGTTCGAGTAACGGAAGCGTGGTTAAAGGGTCCATCTTAGAACGCTGCCCTGACCTGAACCTCGAGTTAACCATCAGTCCTCCTCGCCAACAACATCAACAACAACAGCCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCCCAAGAGCAAGGATTGCAGCTGCAACGTGGCCAACGCAGTCACTGCCAACAACACCGCTCCTCCTGCTTCTGCTTCTGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCACCTTGGAAATGAAATGA 762 0.5 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASSATVVTVATASNISFGKQEQETTSSSNGSVVKGSILERCPDLNLELTISPPRQQHQQQQPQKNLCFVCSLGLPKSKDCSCNVANAVTANNTAPPASASAYDFLGLKTNGVWDCTTLEMK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0359 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu11g0359 253 CDD SANT 69 112 IPR001005 -
Pvu11g0359 253 Gene3D - 14 66 - -
Pvu11g0359 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu11g0359 253 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu11g0359 253 CDD SANT 16 61 IPR001005 -
Pvu11g0359 253 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pvu11g0359 253 SMART sant 66 114 IPR001005 -
Pvu11g0359 253 SMART sant 13 63 IPR001005 -
Pvu11g0359 253 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 219 - -
Pvu11g0359 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu11g0359 253 Gene3D - 68 137 - -
Pvu11g0359 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu11g0359 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 219 - -
Pvu11g0359 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0359 Pvu-Chr11 3061388 3062803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0359 1 253 MYB Transcription Factor Family AT4G34990 59.124 4.78e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g0359 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0359 K09422 - gmx:780553 436.032