Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0348 ATGAGTGCAAGAGCGAGTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGGTTCATAACCCCCGATGATGGTTCCGAGGATCTTTTCGTTCATCAATCGCAGATCAAATCTGACGGTTTCCGAAGCCTTGCTGAGGGAGAGTCCGTTGAGTTTGCCATTGAATCTGACAGTGACGGACGCGCCAAGGCGGTCGATGTCACCGGTCCTGACGGTGCCAGCGTCCAGGGAACCCGTCGTGGTGGTGGAGATGGAGGCCGAAGCTACGGTGGTGGACGTGGTGGCGGTGGCGGTGGCTACGGCGGCGGATATGGTGGAGGCGGTGGCTATGGTGGTGGACGAGGTGGAGGTGGCGGCGGCGGTGCTTGCTACAACTGTGGAGAGTCCGGTCACCTAGCTAGGGATTGCTTCCAGGGAGGCAGCGGAGGCGGAGACAGGTACGGCGGCGGTGGAGGTGGAGGAGGTAGATATGGTGGCGGCGGCGGTGGAGGAGGAAGGTATGGAGGAGGCGGTGGAGGCGGCGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCACTTTGCCAGAGAATGCCCAACTAATGGTGGTGGTCGTTGA 603 0.607 MSARASGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDSDGRAKAVDVTGPDGASVQGTRRGGGDGGRSYGGGRGGGGGGYGGGYGGGGGYGGGRGGGGGGGACYNCGESGHLARDCFQGGSGGGDRYGGGGGGGGRYGGGGGGGGRYGGGGGGGGGGSCYNCGESGHFARECPTNGGGR* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0348 200 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Pvu11g0348 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 156 - -
Pvu11g0348 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 162 195 - -
Pvu11g0348 200 SMART csp_8 6 71 IPR011129 GO:0003676
Pvu11g0348 200 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Pvu11g0348 200 SUPERFAMILY Retrovirus zinc finger-like domains 113 141 IPR036875 GO:0003676|GO:0008270
Pvu11g0348 200 Gene3D - 117 147 - -
Pvu11g0348 200 Gene3D - 175 200 - -
Pvu11g0348 200 ProSiteProfiles Zinc finger CCHC-type profile. 180 194 IPR001878 GO:0003676|GO:0008270
Pvu11g0348 200 SMART c2hcfinal6 123 139 IPR001878 GO:0003676|GO:0008270
Pvu11g0348 200 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Pvu11g0348 200 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pvu11g0348 200 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pvu11g0348 200 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Pvu11g0348 200 Pfam Zinc knuckle 179 194 IPR001878 GO:0003676|GO:0008270
Pvu11g0348 200 Pfam Zinc knuckle 123 139 IPR001878 GO:0003676|GO:0008270
Pvu11g0348 200 Gene3D - 1 82 IPR012340 -
Pvu11g0348 200 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Pvu11g0348 200 PANTHER COLD SHOCK PROTEIN 1 3 156 - -
Pvu11g0348 200 PANTHER COLD SHOCK PROTEIN 1 162 195 - -
Pvu11g0348 200 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Pvu11g0348 200 PRINTS Eggshell protein signature 82 93 - -
Pvu11g0348 200 PRINTS Eggshell protein signature 141 156 - -
Pvu11g0348 200 PRINTS Eggshell protein signature 168 178 - -
Pvu11g0348 200 PRINTS Eggshell protein signature 197 200 - -
Pvu11g0348 200 MobiDBLite consensus disorder prediction 62 91 - -
Pvu11g0348 200 SUPERFAMILY Retrovirus zinc finger-like domains 161 197 IPR036875 GO:0003676|GO:0008270
Pvu11g0348 200 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Pvu11g0348 200 ProSiteProfiles Zinc finger CCHC-type profile. 124 137 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0348 Pvu-Chr11 2932933 2934192 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pvu11g0348 CSD 2.3e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0348 - K09250 gmx:100799708 191.815