Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0347 ATGGCTTCCCTCTATGATGTGCTTGGAATTTCAATCGGTGCAAGCTGCGTGGAAATAAAGGCTGCTTACAGAAAGCTAGCAAGAACATACCATCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTCACCAATTCATGATAATCCATTCAGCTTACTCAACGTTGTCTGACCCAGAAAAGAGAGCTCAATATGACACAGAAATCTACAGATACAGAAGATCAGCAAACATGGCTTCCATGGCAGGAAGAAATCACACATTTTCCTGCGCTGGAGGAAGTGGGAGGAAATGGGAAACGGATCAATGTTGGTAG 318 0.4434 MASLYDVLGISIGASCVEIKAAYRKLARTYHPDVVAMNQKESSAHQFMIIHSAYSTLSDPEKRAQYDTEIYRYRRSANMASMAGRNHTFSCAGGSGRKWETDQCW* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0347 105 PANTHER - 2 105 - -
Pvu11g0347 105 Gene3D DnaJ domain 1 88 IPR036869 -
Pvu11g0347 105 SMART dnaj_3 2 62 IPR001623 -
Pvu11g0347 105 Pfam DnaJ domain 4 67 IPR001623 -
Pvu11g0347 105 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu11g0347 105 SUPERFAMILY Chaperone J-domain 2 83 IPR036869 -
Pvu11g0347 105 CDD DnaJ 5 59 IPR001623 -
Pvu11g0347 105 PRINTS DnaJ domain signature 5 23 IPR001623 -
Pvu11g0347 105 PRINTS DnaJ domain signature 23 38 IPR001623 -
Pvu11g0347 105 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu11g0347 105 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu11g0347 105 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 105 - -
Pvu11g0347 105 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0347 Pvu-Chr11 2924393 2924710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0347 5 68 C2H2 Transcription Factor Family AT1G74250 44.118 9.82e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0347 - - gmx:100798520 181.8