Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0331 ATGGTAGTGATCATGCAACAGCAGCAGCAACAACAACAGCAACAGCAGAACCCTTCTGCACTGGTGCCATACCTCAAAAATTCCCAATCCTCAACCTCCACCGTCGCCGCCGCAACCGCAACCCCCGCCGCCACTTCCATTAGGTCGCCCTCATCGCAGTCGCCGATCTCCGTCGTCGCTCCCCTCCGCCAACCCCCGCTCTCATCGCATCCGGTGCCAGTTACGGCGGTGGAGCCTGCTTTGACGGCGGTTCCGACGTGTCCGCTGGTGAGAGTCCGCCTCTCGGACATTGGCCCCTATGATGGGGCACCGGCGGGGCCGTATCTGAGAGCAATGGAGGCGCTGTGCGGGTCTCTGCTGCGGCACAATGCCGCGTTGATCGAATTAGGGAGCGAGGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCAAAGTTGTTTTTCAGAAGTAGGGCCCAACTTGGTGTTGGGAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTATTCTCCCCCCTGCATGGCTGATATTTTTAGATGCATGGGAAAGGCATCTCGATCTTCCCTAAGTGCCATTGCAAGATATTTACGTCTTAGAAGCGATGTTTTTAACCATTTGCTCGATGATGCTCCCTTGCCTGCTAATGAGGTGTCATCGTCAGTTCTTGTTGCGACATACTCACATTCTTCTTTGCAAAATGGAAGAGGTGCCATTGGCGGTGGTAAGCCTACCATGAATGGTGAAGTTGAAAAGGGATTGTTGACGTTGATATCTTCTGACACTCCTGGTCTTCAGATATGTGACCCCAGTGGTCGCTGGTATCTGGCTGACAGTGGTTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCGCTTAGTCATGCTACTGCTGGTCTACGTCCTGCTACATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGGGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGAAATGCTATATTAGATTGTTCCCCAATAGCAGCAGCTGGCCATGTTATTCCCCAAAAATATGTTCGAATTTCTGTAAGCCAATTTATGGATGAGCTTGCTGCTGAAGAATTGATAGGCAGCAGATGTGATAATGCTGATGTTGCAGCTCAAAACAGTATGAACAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGTTTGTCTCATGTGGACATTCTTTTGGTGGTCTTATGCTGAGGAGAGTCATTGAAACATCCAGATGTACTCTCTGCAATACAGAAATTGAAACTGGTCCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGATCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTTTAGTGCTGCTGATGGACTTCAGCGGGGAGTGCAATATCCATTCTCGGTAAATGAGAAAGTCATTATTAAGGGTAACAGAAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGGGAGAATGTCCGTCTGCAGTACCGTTCTCTTAGGAAGCTCTTAATCTCATCAGTGGACCAGTGTCCCTCACTACCAATTCAAAATACCAGCTCTTAA 1767 0.4839 MVVIMQQQQQQQQQQQNPSALVPYLKNSQSSTSTVAAATATPAATSIRSPSSQSPISVVAPLRQPPLSSHPVPVTAVEPALTAVPTCPLVRVRLSDIGPYDGAPAGPYLRAMEALCGSLLRHNAALIELGSEDTALMRCGLEGAKLFFRSRAQLGVGKGSRGVYMYRAGRALEDWDYSPPCMADIFRCMGKASRSSLSAIARYLRLRSDVFNHLLDDAPLPANEVSSSVLVATYSHSSLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQICDPSGRWYLADSGSGPGDLLLITGKALSHATAGLRPATSYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQKYVRISVSQFMDELAAEELIGSRCDNADVAAQNSMNKEPSLRSVLSDPLSGTFLEDAMFVSCGHSFGGLMLRRVIETSRCTLCNTEIETGPLIPNLALRAAAAAVKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFSAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIETGENVRLQYRSLRKLLISSVDQCPSLPIQNTSS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0331 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 468 IPR013083 -
Pvu11g0331 588 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 83 586 - -
Pvu11g0331 588 SUPERFAMILY Clavaminate synthase-like 182 348 - -
Pvu11g0331 588 SUPERFAMILY RING/U-box 399 465 - -
Pvu11g0331 588 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 83 586 - -
Pvu11g0331 588 Gene3D - 171 377 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0331 Pvu-Chr11 2789989 2800071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0331 399 569 Plant U-box Gene Family AT5G05230 40.351 2.44e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0331 - - gmx:100807199 1005.36