LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0315	ATGTACTTGAGGAGAATACAATGCAGCAGAGATCGAGTATGGGCTTTGGTGTTGCAGCCATCGAAATACTTATTTAGGCCAAGATTTTCTGATCATCAATACTTTCAATCTTTGTCCCCTAAGACCACTGTGGAAGAATATGCTTCCCATGGCAGGATCATCAGAGAACATCTTTTAGGTTCATATTCATGTGAACATACTTCATCTAGAATTAGTTTTGCTGCTCGGGACAGAAGGCCTAGTTTATGTCATAACAGTGCTCAGTTACGTGCTTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATGATGGAACCAACTTTGATAAAGGACAGACTCAACAAGATAAGTTAGGGAAAGATGTTGAGTACTGCAATGCACATGCTCGACTTGGAGAACAGGAACAGGAGGAATGGTTTAATAATGAGAGGCTAACTATAGAAAATAAAAGGAGAGAATCACCATTTTTGACGAGACGGGATAAGTTTAAAAATGAGTTCATGAGAAGAATTATTCCCTGGGAGAAAATAAACATTTCCTGGGACACATTTCCTTATCATATTCATGAGAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTAGCTTCAACTTTTGGTACTCGGCTCTCGTCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTTTTAGTGCTTGATAACAGCATCCTTGCTCCTTATGATATTGATGATGATTTATCATCGGACTATGAGTCTGATGATGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTAGAATCAGAGAACGAGGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGTAGTACAGAGGCAAAGTCAGACGCAAGTGACAATGAAGATGCAGTAGCTTCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCCGTTCTTCGGAAACTTGTTCCTTATAATGTGGAAGAATTTGAAAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAGTCCTCCAAGTCTAATTCTAGTGATGCCAAGACTTCTGATAAATCTGGATGCCAGCTAAGGAAAGGTGACCGCGTGAGGTACATTGGGCCATCTGTTCAAGTTACAGACGAGGATAGGATTATACTTGGGAAGATACCAACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGGCCTTTAACTAATGGTCAGAGGGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCCGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAACTTTAATGATGATCATGCCAAACCCCCGGTTTTTTGGATTCACGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAAGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCCAAGTCAATCCGAAATGAGTTTTTTCATAAGGTTGAGGAGATGTTTGACCAGTTATCTGGCCCTGTAGTATTGATTTGTGGGCAAAATAACGTTCAGTCAGGACCAAAAGAAAAAGAACAATTTACAATGATACTTCCAAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGACGAAATTAACAAGCTCTTTTCTAATGTTCTGAGTATACATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTCGAGGAAGATAAGAAAATTGTGACTTCACGTAGTAATTTGAATGTACTACGGAAGGTTCTCGAAGAACATCAGCTATCATGCATGGACCTCTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCAAAGCTGAAAAAGTAGTAGGCTGGGCAAAAAATCACTACTTGTCGTCGTGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGATGAGCCAGGAAACCATGTCACGGAAGTCTTCTCAAAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTAGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCCCTTAATGAACTCGTAATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGAGGAAATCTGTTACGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGCACTGGTAAGACCCTTCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCTCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTAGAGGTGGTGCTTTTGAGCATGAAGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTTGGTGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTCAGTTAGTCAAACTTGCTAACTTGACTGATGGATACTCGGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCCGTTCAAGAACTCTTAGAGGAAGAAAAGAAGGGAGCCAGTAATGTTACGACCTCAATATTAAGGCCTCTTAATTTGGATGATTTTGTTCAGTCAAAATCCAAGGTGGGTCCATCAGTTGCGCATGATGCAACAAGCATGAGTGAGTTGAGGAAGTGGAACGAAATGTATGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA	3129	0.4088	MYLRRIQCSRDRVWALVLQPSKYLFRPRFSDHQYFQSLSPKTTVEEYASHGRIIREHLLGSYSCEHTSSRISFAARDRRPSLCHNSAQLRAYSSESDGRNASEDKQVHVNDGTNFDKGQTQQDKLGKDVEYCNAHARLGEQEQEEWFNNERLTIENKRRESPFLTRRDKFKNEFMRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHNKLASTFGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDYESDDDNAESGEEGSLESENEDDNEASNEEEWASSTEAKSDASDNEDAVASAEAHLKKVKAAVLRKLVPYNVEEFEKIVAGESESSESSKSNSSDAKTSDKSGCQLRKGDRVRYIGPSVQVTDEDRIILGKIPTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENFNDDHAKPPVFWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSIRNEFFHKVEEMFDQLSGPVVLICGQNNVQSGPKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEINKLFSNVLSIHPPKDENQLATFKKQLEEDKKIVTSRSNLNVLRKVLEEHQLSCMDLLHLNTDGIVLTKLKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAVSRLMSQETMSRKSSQSLKNLAKDEFESNFISSVVPPSEIGVKFDDVGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFQLVKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGASNVTTSILRPLNLDDFVQSKSKVGPSVAHDATSMSELRKWNEMYGEGGNRTKSPFGFGS*	1043

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	97	111	-	-
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	358	387	-	-
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	93	122	-	-
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	273	308	-	-
	Pvu11g0315	1042	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	1	1040	-	-
	Pvu11g0315	1042	Pfam	AAA+ lid domain	945	978	IPR041569	-
	Pvu11g0315	1042	Pfam	ATPase family associated with various cellular activities (AAA)	789	919	IPR003959	GO:0005524\|GO:0016887
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	273	325	-	-
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	362	378	-	-
	Pvu11g0315	1042	Gene3D	-	921	1006	-	-
	Pvu11g0315	1042	ProSitePatterns	AAA-protein family signature.	892	911	IPR003960	GO:0005524\|GO:0016887
	Pvu11g0315	1042	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	747	969	IPR027417	-
	Pvu11g0315	1042	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	1	1040	-	-
	Pvu11g0315	1042	CDD	AAA	787	920	-	-
	Pvu11g0315	1042	MobiDBLite	consensus disorder prediction	310	325	-	-
	Pvu11g0315	1042	Gene3D	-	748	1024	IPR027417	-
	Pvu11g0315	1042	SMART	AAA_5	785	922	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0315	Pvu-Chr11	2600099	2622407	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0315	748	990	Calmodulin-binding Proteins	AT3G56690	38.211	6.86e-41	161

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0315	-		-	gmx:100802939	1763.43