Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0314 ATGGGCAAGTCTAGCAAGAAATCTGCCGTCAAGGTTGACGCTGCTCCAGCCGTCGTTCCATCATCGAAATCCGCCAAGCAGGGCAAGAGACAAGCTGAAGAAGAAATTGAGAAGGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAGAAAAAGAAGGAAGCAAAGGTGCAAAAGAAGGAAAGTAGTTCTGACGATTCTTCTTCTGAATCTGAAGATGAGAAACCTGCTGTCAAACCTACCGCCCCGTCAAAAAAGGCACCTGCCAAAAATGGTACTGGAAATGCCCCTTCAAAGAAAGGAAAGCCAGCTTCCAGCTCTTCTGAATCATCTGAAGATAGTTCTTCTGATGAGGAAGAAGTGAGTGCAAAGAAGCCACAGAAAGTGATAGTTGAGAAACAAAAGAAAGCTGCACCTGTGCCAAAGAAGGAGAGTAGTTCAGAAGATGATTCCTCAGAATCCGAAGATGAGAAACCTGTACCAAAAGCCGCTGTTCCTTCAAAAAAGGCTCCCGCTAAAAATGGCGCACTAGCAAAGAAAGGCAAGACAGCCAGCAGCTCCAGCGATTCTGAATCTTCTGAAGATGAGAAACCTGCTTCCAAGAATGGTGCAGTAACTGCCCCTGCAAGTAAAGGAAAACCAGCTGCAGTTTCAGACTCTTCTGATTCGTCCTCTGACGAGGAAGATGTTCCAAAGAAAATATCTTCAACTACAAAGCCGCCTGCATCATCAGTTGCTCCAGCTAAGAAAGTGGAAAGCTCGGATGATGATGATTCAAGTGAAGAAGATTCCGATGATGACAATGATGTCAAGCCTGCTGCAGCTGCTGTGTCCAAGCACACTGCTGTGTTAAAGAAGAAAGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGAAGAAGAAGACGATAAAAAGACTGCCAAAACTGTTTCCAATGCCAAGACTTTGCCTTTGTCTAAGAAGCCTGTAAAATCGTCAAAGACTAGTGATTCAGATGAGGAGTCTTCTGACAGTGAATCTGAAGAGGAAAAGCAGGGAAAGAAGATGGAAATAGACGATGATGATAGTTCTGATGAAAGTGAACAACCTCAGAAGAAGGCTGTGAAAAGTGCCAAAGAAAACAGTGAGAGTTCTGATGAGGATAGTGATGAAGAAAGTGAGGAGGAACAATCCAAAACTCCGCAAAAAAGAGCTAGGGATGTTGAGATGGTTGATGCTTCAGCTGGAAAGAAAACTCCCAATACCCCAATAACACCAAATGCAGAAAGTGGTGCTTCAAATACTATTTTTGCAGGGAACCTGGCATACAGCGTTGAGCGATCTGATGTTGAAGATTTCTTCAAGGATTGCGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATGAGGATGGAAGGTTCAAGGGATTTGGACATGTGGAGTTTGCAACAGTTGAGGCTGCCCAGAAAGCTCTTGAGTTGAATGGTCATGAATTGCACAATCGTCCACTGCGGCTGGATTCTGCCAGGGTTCGGGACAGGAGTTCTTTTACTCCCAATAGCAGCAACTGGAACAACTCATCACAGAAAAGTGGAAGAGGCCAGTCTCAAACTCTATTTGTAAGGGGTTTTGATAAATCCCTTGGGGAGGATGAGATAAGAAGTAGTTTGGAAGAACATTTTGGTTCCTGTGGAGAAGTTACAAGGGTATCTATTCCCAAAGATTACGAGACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTAGTGATGCTGATGGCATCAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACTCTTTCTGTGGATGAAGCAAAGCCGAGGGATAACCAAGGCTCTGGTGGTAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGTGGAAGAGGTGGAAGTGGCGGTAGATTTGGTGGTAGTGGTGGTGGCCGTTTTGGTGGTGGAAGAGGTGGAAGTGGTGGCCGTTTTGGTGGTGGAAGAGGAGGTGGTGGAAGGGGTCGTGGACCACCCAGTAGATCCTTCGCTGCGGAAGGGAAAAAGACCAAGTTTGCCGATGAAGACTAG 2082 0.4558 MGKSSKKSAVKVDAAPAVVPSSKSAKQGKRQAEEEIEKVIAKKQKIEEVAQKKKKEAKVQKKESSSDDSSSESEDEKPAVKPTAPSKKAPAKNGTGNAPSKKGKPASSSSESSEDSSSDEEEVSAKKPQKVIVEKQKKAAPVPKKESSSEDDSSESEDEKPVPKAAVPSKKAPAKNGALAKKGKTASSSSDSESSEDEKPASKNGAVTAPASKGKPAAVSDSSDSSSDEEDVPKKISSTTKPPASSVAPAKKVESSDDDDSSEEDSDDDNDVKPAAAAVSKHTAVLKKKVDSSDSDDSSSEEEDDKKTAKTVSNAKTLPLSKKPVKSSKTSDSDEESSDSESEEEKQGKKMEIDDDDSSDESEQPQKKAVKSAKENSESSDEDSDEESEEEQSKTPQKRARDVEMVDASAGKKTPNTPITPNAESGASNTIFAGNLAYSVERSDVEDFFKDCGEVVDVRLATDEDGRFKGFGHVEFATVEAAQKALELNGHELHNRPLRLDSARVRDRSSFTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRSSLEEHFGSCGEVTRVSIPKDYETGAVKGFAYMDFSDADGISKALELHETELGGYTLSVDEAKPRDNQGSGGRGGGGRGGGGRFGGGRGGSGGRFGGSGGGRFGGGRGGSGGRFGGGRGGGGRGRGPPSRSFAAEGKKTKFADED* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0314 693 MobiDBLite consensus disorder prediction 342 378 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 27 82 - -
Pvu11g0314 693 CDD RRM2_NUCLs 532 610 IPR034350 -
Pvu11g0314 693 PANTHER BNAA08G02930D PROTEIN 236 652 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 1 426 - -
Pvu11g0314 693 SUPERFAMILY RNA-binding domain, RBD 419 528 IPR035979 GO:0003676
Pvu11g0314 693 Coils Coil 22 63 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 506 530 - -
Pvu11g0314 693 CDD RRM1_NUCLs 430 506 IPR034349 -
Pvu11g0314 693 SUPERFAMILY RNA-binding domain, RBD 521 642 IPR035979 GO:0003676
Pvu11g0314 693 MobiDBLite consensus disorder prediction 391 408 - -
Pvu11g0314 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 533 605 IPR000504 GO:0003723
Pvu11g0314 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 431 499 IPR000504 GO:0003723
Pvu11g0314 693 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 236 652 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 312 326 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 119 165 - -
Pvu11g0314 693 Gene3D - 515 647 IPR012677 -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 604 693 - -
Pvu11g0314 693 MobiDBLite consensus disorder prediction 507 530 - -
Pvu11g0314 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 505 IPR000504 GO:0003723
Pvu11g0314 693 SMART rrm1_1 430 501 IPR000504 GO:0003723
Pvu11g0314 693 SMART rrm1_1 532 608 IPR000504 GO:0003723
Pvu11g0314 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 531 612 IPR000504 GO:0003723
Pvu11g0314 693 Gene3D - 334 514 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0314 Pvu-Chr11 2592657 2597628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0314 425 594 Eukaryotic Initiation Factors Gene Family AT4G34110 31.579 4.11e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0314 K11294 - gmx:100779929 508.834