LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0294	ATGGCACTCATATTCTGGATCCTATTTATTTCCTTCCTGATCAACACGGTTGTTGGAGATGAGACATGGAAGCAGGAGGATGACAGAGTAAAAAGTTTGCCAGGACAACCACTGGTGAACTTCAATCACTACGCAGGTTATATTAAATTAAGACCAGATCAAGAGAAAGCACTATTTTATTGGTTTTTTGAAGCTGAAGATGCTCCATCGCGCAAACCTCTTGTGCTTTGGCTTAATGGAGGACCTGGTTGCTCCTCAATTGCCTTTGGGGCAGCACAAGAGATTGGTCCATTTTTGGTAGACCAGGAAGAACATCTAAAATATAACAAATTTTCTTGGAATAAAGTTGCAAACATCATATTTTTGGATTCACCTATTGGTGTTGGGTTTTCTTACACTAACAATTCCAAGGACTTAAGTGAGCTTGGTGATGAAGTTTCTGCTTCTGATAATTATCATTTTTTGGTTGGTTGGTTTAAAAGATTTTCAAACTTTAGATCCAACGAATTTTATATTGTAGGAGAGAGTTATGGAGGACATTATGCTCCACAACTTGCTGACCTTATATATGAAAGAAATAAAAGAGGTCCTTACATCAATTTGAAGGGATTGATGATGGGAAATGCTGTGATAAATGATATTACAGATTTAAAAGGGATGTTTGAGTATGCCTGGAGTCATGCAATAATTTCAACACAAGTGTTCGATGGAATAAAAAGACACTGTAATTTCAGTGAAAAAAGACACACCAGTGATTGTGAACTTAATATCAATAAGTTTTTAAAATCTTTTTCGGATATTGACGTTTTCAATATTTACTCACCGGTTTGTCTCAAAGACAAAGGTTATAAAGGACCAAATTCAACAAGACCTATTTTTGCTCCCCAGGTTCTTTGGAATACATTACCATCATCAGGATACGATTATTGTCCAGATGATTATGTAAGAAAGTATTTCAACAAGAAGAATGTTCAGAGGGCAATCCATGCAAATGTAACTAACTTGCCTTATCCATTTACAGTTTGCAGCGGTATAATTGAGAAATGGAATGACGCCCCAGCCACAATGCTGCCACTAATTCAGAAGCTATTAAGTGTTGGTTCACGCATTTGGATTTACAGTGGAGACATTGATGGTAGAGTTCCAATACTATCAACAAGATATAGTTTGGAAGAGCTAAAACTGAATGTAACCCAGGAGTGGAGAGCTTGGTTTGAAGGGGTAAAAGTGGGAGGGTGGGTGGAGGAGTATGAGGGTGGTCTCACTTTTGCCTCCGTTAGAGGTGCTGGCCACCAAGTTCCAGTTTCTGCACCACAACCTGCACTTTCTCTCTTCTCCCATTTCCTCTCTTCTCAACCTCTTCCATCTTCTCCCTTCTAG	1380	0.3862	MALIFWILFISFLINTVVGDETWKQEDDRVKSLPGQPLVNFNHYAGYIKLRPDQEKALFYWFFEAEDAPSRKPLVLWLNGGPGCSSIAFGAAQEIGPFLVDQEEHLKYNKFSWNKVANIIFLDSPIGVGFSYTNNSKDLSELGDEVSASDNYHFLVGWFKRFSNFRSNEFYIVGESYGGHYAPQLADLIYERNKRGPYINLKGLMMGNAVINDITDLKGMFEYAWSHAIISTQVFDGIKRHCNFSEKRHTSDCELNINKFLKSFSDIDVFNIYSPVCLKDKGYKGPNSTRPIFAPQVLWNTLPSSGYDYCPDDYVRKYFNKKNVQRAIHANVTNLPYPFTVCSGIIEKWNDAPATMLPLIQKLLSVGSRIWIYSGDIDGRVPILSTRYSLEELKLNVTQEWRAWFEGVKVGGWVEEYEGGLTFASVRGAGHQVPVSAPQPALSLFSHFLSSQPLPSSPF*	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0294	459	ProSitePatterns	Serine carboxypeptidases, histidine active site.	421	438	IPR033124	GO:0004185
	Pvu11g0294	459	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 35	21	452	-	-
	Pvu11g0294	459	SUPERFAMILY	alpha/beta-Hydrolases	25	455	IPR029058	-
	Pvu11g0294	459	ProSitePatterns	Serine carboxypeptidases, serine active site.	172	179	IPR018202	GO:0004185
	Pvu11g0294	459	Gene3D	-	310	346	-	-
	Pvu11g0294	459	Pfam	Serine carboxypeptidase	35	450	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	109	121	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	132	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	158	183	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	421	434	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	Gene3D	alpha/beta hydrolase	24	279	IPR029058	-
	Pvu11g0294	459	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	21	452	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0294	459	Gene3D	-	356	450	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0294	Pvu-Chr11	2354898	2357294	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0294	367	454	Calmodulin-binding Proteins	AT2G22960	32.955	2.71e-11	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0294	K16297		-	gmx:100799746	634.024