Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0289 | ATGGAGGGAAAAGGAACAGCAACCGCCACAGGTTGTTACAAGTGCGGCCGACCTGGTCACTGGTCACGAGATTGTCCTTTCTCTGCTCCCAATCCCAATCCAAACCCTAACACCTCCACCGATCCCACTTCTACTCCTTCTTCCTCTTCTTTCAAGCCCAGATCCGCCGCCGAAAAGCCCAAGAAACTCCCCCGAGCAAAGCCCAAACTAACACCGGAGATTCTTCTCTCCGACGAAGGCCTTGGTTACGTCCTTCGTTATTTTCCTCACCAGTTCAAATACCGTGGTCGCGGCCACGAGGTTCGTGATTTGGGTAACCTGCTTCAGCTGTACACCGAATGGCACTCTCGCTTGCTTCCTTATTACTCTTTCAATCAGTTTATTCATAAAGTGGAGAAAGTTGCTGCTACCAGGCGTGTCAAGACATGCCTTGGAGAATTGAGAGAAAGAGTTGCAAGTGGTGGAGATCCAACAAAACTGCGTGAACCACTGGTTGTGCATGACATTCCAATTGATGAACACGGATTTGCTGGATCTGCTGAAGATGGGGGCGCAACTCTTCAAGAGAAAGATGTGTTTGCGGATTCTGAAAATATTACTGACATTCAGGAAGACATGCTTAATGATATATATGATAAAGCTACCGAAGAACCTTCTCAGTCCACGGACAATGTGATTGGCACTAGCATGGCTTCAAAAAGTAAAGCAACCGAAAACACAGCAGAGGAAGTCCAAAATAATGGATCCAGCCAGTCTGGCAAAGCTGAGATAACAGAAGATCAGAGAGCTCGTATGGAAGCAAATAGATTGAAGGCACTGCAAAGGCGTGCTGCTCGAGCTCCCTCATCACAAGCCCCCTAA | 861 | 0.4785 | MEGKGTATATGCYKCGRPGHWSRDCPFSAPNPNPNPNTSTDPTSTPSSSSFKPRSAAEKPKKLPRAKPKLTPEILLSDEGLGYVLRYFPHQFKYRGRGHEVRDLGNLLQLYTEWHSRLLPYYSFNQFIHKVEKVAATRRVKTCLGELRERVASGGDPTKLREPLVVHDIPIDEHGFAGSAEDGGATLQEKDVFADSENITDIQEDMLNDIYDKATEEPSQSTDNVIGTSMASKSKATENTAEEVQNNGSSQSGKAEITEDQRARMEANRLKALQRRAARAPSSQAP* | 287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0289 | 286 | MobiDBLite | consensus disorder prediction | 257 | 273 | - | - | |
| Pvu11g0289 | 286 | SUPERFAMILY | Retrovirus zinc finger-like domains | 8 | 28 | IPR036875 | GO:0003676|GO:0008270 | |
| Pvu11g0289 | 286 | MobiDBLite | consensus disorder prediction | 215 | 286 | - | - | |
| Pvu11g0289 | 286 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
| Pvu11g0289 | 286 | MobiDBLite | consensus disorder prediction | 215 | 256 | - | - | |
| Pvu11g0289 | 286 | ProSiteProfiles | Zinc finger CCHC-type profile. | 12 | 26 | IPR001878 | GO:0003676|GO:0008270 | |
| Pvu11g0289 | 286 | Pfam | Zinc knuckle | 11 | 26 | IPR001878 | GO:0003676|GO:0008270 | |
| Pvu11g0289 | 286 | MobiDBLite | consensus disorder prediction | 24 | 68 | - | - | |
| Pvu11g0289 | 286 | Pfam | Replication Fork Protection Component Swi3 | 69 | 150 | IPR012923 | GO:0005634|GO:0006974|GO:0048478 | |
| Pvu11g0289 | 286 | PANTHER | TIMELESS INTERACTING-RELATED | 7 | 281 | IPR040038 | GO:0000076 | |
| Pvu11g0289 | 286 | SMART | c2hcfinal6 | 11 | 27 | IPR001878 | GO:0003676|GO:0008270 | |
| Pvu11g0289 | 286 | PANTHER | TIMELESS-INTERACTING PROTEIN | 7 | 281 | - | - | |
| Pvu11g0289 | 286 | Gene3D | - | 6 | 44 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0289 | 119 | 286 | Cytochrome P450 | AT2G34490 | 29.586 | 3.99e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0289 | K10904 | - | gmx:100808422 | 409.838 |