LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0287	CCTGGTTGTTCTTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCTCCAAGACAGTAGCCAGCCAAAGCTGAAATTGAACCCTTATTCATGGAACAATGCTGTCAATCTTCTGTTTTTGGAAAGCCCTGTTGGAGTGGGATTTTCCTACACCAACACCAGCAGTGATATAAGTGAGCTTGGTGACGCCATTACTGCTAAAGATTCACACACCTTTATCATCAACTGGTTTAGGAGGTTCCCACAGTTCAGATCACACAAGTTCTACATTGCTGGTGAAAGCTATGCAGGGCACTATGTTCCACAACTTTCTGAGCTTATCTTCGATAATAATCTCAACCATGCTGAGAAAGACTACATCAACTTCAAAGGATTTCTGATTGGAAATGCATTATTGGACGATGAAACGGATCAAAAGGGTATGATAGATTATGCATGGGATCATGCAGTGATATCAGATGCACTGTACCATAATATCACAGCCATATGCGATTTCAAACGTCCAATTCAAAACCAAACAACTGAATGCAACGTTGAATTGAACAAGTACTTTGATGTGTACAAGATTATTGACATGTATAGCTTGTACACTCCCAGGTGTTTCAGCAACCTCAGCAGCACCACCACAAAGGAACCTTCTCAAATTTTTTCAAAACTTAATGGGTGGCAGAGAAACCGAGCTGGATATGATCCCTGTGCATCAGATTACACTGAAGTTTACCTGAACAGACCAGAAGTCCAAGAGGCACTGCATGCCAATGTCACAAAAATTCCCTATCCATGGACTCACTGCAGTGATAACATCACATTTTGGAATGACTCACCAGAGTCCATTCTTCCGGTCCTCAAGAAGCTTATTGCTGGTGGTATTCGCATTTGGGTTTACAGTGGAGATACTGATGGAAGAATTCCAGTAACAGCAACAAGATACACACTGAGAAAGTTGGGGCTTGGGATTGTGGAGGATTGGAGGGCATGGTATACTAGCAGACAGGTGGGAGGATGGAGCATTGTGTATGATGGTCTTACTTTTGTTACCATAAGAGGTGCTGGGCATCAAGTTCCTACTTTCACTCCCAAGCAAGCTCTGCAATTACTTCAACATTTCATAGACAATAAGAAATTACCATCTCAACCAATTTAA	1152	0.421	PGCSSIGYGEAEELGPFFLQDSSQPKLKLNPYSWNNAVNLLFLESPVGVGFSYTNTSSDISELGDAITAKDSHTFIINWFRRFPQFRSHKFYIAGESYAGHYVPQLSELIFDNNLNHAEKDYINFKGFLIGNALLDDETDQKGMIDYAWDHAVISDALYHNITAICDFKRPIQNQTTECNVELNKYFDVYKIIDMYSLYTPRCFSNLSSTTTKEPSQIFSKLNGWQRNRAGYDPCASDYTEVYLNRPEVQEALHANVTKIPYPWTHCSDNITFWNDSPESILPVLKKLIAGGIRIWVYSGDTDGRIPVTATRYTLRKLGLGIVEDWRAWYTSRQVGGWSIVYDGLTFVTIRGAGHQVPTFTPKQALQLLQHFIDNKKLPSQPI*	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0287	383	Pfam	Serine carboxypeptidase	1	375	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	PANTHER	CARBOXYPEPTIDASE	1	382	-	-
	Pvu11g0287	383	Gene3D	alpha/beta hydrolase	1	205	IPR029058	-
	Pvu11g0287	383	ProSitePatterns	Serine carboxypeptidases, serine active site.	93	100	IPR018202	GO:0004185
	Pvu11g0287	383	PRINTS	Carboxypeptidase C serine protease (S10) family signature	30	42	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	PRINTS	Carboxypeptidase C serine protease (S10) family signature	43	53	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	PRINTS	Carboxypeptidase C serine protease (S10) family signature	79	104	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	PRINTS	Carboxypeptidase C serine protease (S10) family signature	345	358	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	ProSitePatterns	Serine carboxypeptidases, histidine active site.	345	362	IPR033124	GO:0004185
	Pvu11g0287	383	Gene3D	-	281	374	-	-
	Pvu11g0287	383	Gene3D	-	235	272	-	-
	Pvu11g0287	383	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	1	382	IPR001563	GO:0004185\|GO:0006508
	Pvu11g0287	383	SUPERFAMILY	alpha/beta-Hydrolases	1	378	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0287	Pvu-Chr11	2248800	2251306	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0287	240	378	Calmodulin-binding Proteins	AT2G22960	31.429	5.55e-16	73.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0287	K16297		-	gmx:100781503	719.539