Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0271 ATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGAGATCGACTCAATGAGCAATTTGTAGTGCTGGGCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTATAGGTGATACCATTCAATTGCTGCAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATACTACACTAAATGAAGAATCTTGTGAGTTGGCTCGTGAGAAAAATGATCTTAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGCTCCACCATCATATCCATATCCAGTGCCAATGCCATTACCTCCTGCTCCAATTACTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCGTCATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCTATCCAACACATAGCCCCACCTCTTCATCCAGGTTTTCAGTCCCACATGTCAGGTAAACAAGAGTCCAGAAACAAATCCAAGGAGAGTATGGTTGAAAAACATGAGGATTCAAATGATGTCACTGCAGACCAGACTCCCGAGTCTTCTTCAGACCAGGACTTGTCATCTGGACAAAGAAAATCTAGCGAGTTGCCAAGGAAACAAAGCAGTTGCAATGAAGCAAGTTCGTTAGGTTGGTGTTCTTCATCTAGTAGCGTTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGTTAA 831 0.4176 MDCTAARKTQKADREKLRRDRLNEQFVVLGNILDPDRPKNDKATIIGDTIQLLQDLTSQVSKLKDEYTTLNEESCELAREKNDLREEKASLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVAPPSYPYPVPMPLPPAPITMQPYPFYANQHSAIIPNPCSSYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKSKESMVEKHEDSNDVTADQTPESSSDQDLSSGQRKSSELPRKQSSCNEASSLGWCSSSSSVQESSSSSVVHEHKG* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0271 276 Coils Coil 5 25 - -
Pvu11g0271 276 MobiDBLite consensus disorder prediction 218 269 - -
Pvu11g0271 276 SMART finulus 12 62 IPR011598 GO:0046983
Pvu11g0271 276 Coils Coil 53 108 - -
Pvu11g0271 276 Gene3D - 3 55 IPR036638 GO:0046983
Pvu11g0271 276 Gene3D - 56 115 - -
Pvu11g0271 276 PANTHER TRANSCRIPTION FACTOR BHLH121 1 275 IPR044579 GO:0003700|GO:0055072
Pvu11g0271 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Pvu11g0271 276 MobiDBLite consensus disorder prediction 182 276 - -
Pvu11g0271 276 CDD bHLH_AtILR3_like 11 85 - -
Pvu11g0271 276 MobiDBLite consensus disorder prediction 196 217 - -
Pvu11g0271 276 PANTHER TRANSCRIPTION FACTOR BHLH121 1 275 - -
Pvu11g0271 276 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Pvu11g0271 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0271 Pvu-Chr11 2155218 2158126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0271 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.833 1.17e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g0271 HLH 5.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0271 - - gmx:100817000 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0271 11 2155218 2158126 Pvu11g0271 11 2155218 2158126 ECH