Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0259 ATGGATGTGGTTCCTTATCCAGTAAGTCCCCCAAACATGCCCCTTTTCACTCCGTCACTGCCACTGCCACATGTTCAACTTCAGCCCTCCCAAACACACCACAACACCACAAACCATAGCAAAACCATTACCAGATTATTAATGGAAGCTATTTCCGTCACCAAACCAGCTTCTCACTCTCACTTCAAAACTATATTCTCTTCAAACCCCAAACACTTCTTTAAACAACAACCCTTTCTCCCCATCCCAAACAACCCCACGCGCTTCCGCCTCGTCACCGCCGCAATCCAAAACCAACAACAAGAAGCAGCAGCAGCTTCCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACACCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCGTCATGGGTTCCGGCAGATTTCATCGCCAAAGACGTTGTCGCGGAGTACGAGACCCCGTGGTGGACCGCTGCGAAGAAGGCCGACGAGTCCGCGCTGAGGAACCTCGTCGACTCCGGGGACGGCCGCGATGTCGACGCTGTTGACGCCGACGGCCGCACCGCGCTCCTCTTCGTAGCGGGACTCGGCTCGGAACCTTGCGTGAAGCTGCTTGCGGAAGCCGGCGCGAATCTGGACCACCGCGACCGCAGCGGGGGACTCGCGGCGCTGCACATGGCGGCGGGTTACGTGAGGCCCGGCGTGGCGAAGTTGCTGCTGGATTTCGGCGCGGATCCCGAGGTGGCGGATGACCGCGGAAGAACGGCGTTAGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGATGCAGTTCGGGCGCAGGATTGGACTCGAGGGCGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGTGGAGGCGCAGGAGATTCTTGAACAGAGAGGGAAGGGAGAAAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGAGGCCAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTCAGAGACCACGAGGCTGGTCTTGAATACGCGGTGGCCGAGGCGGTGCTCGCGAAAAGGGTGGCGGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCGGATTTGGATGAGCCCACTTGGGAGCCCGAGGAAAATGTGGACCCTGACCTTGTGAAAGCGTTCGAGGAAACTAACAAACAGGCCCAGCCCAATAGTAATGGGCCTGCTGTCGTCGTTTCCAATCAAGATGGCCCATAA 1275 0.5757 MDVVPYPVSPPNMPLFTPSLPLPHVQLQPSQTHHNTTNHSKTITRLLMEAISVTKPASHSHFKTIFSSNPKHFFKQQPFLPIPNNPTRFRLVTAAIQNQQQEAAAASKDTEDESYGEVKGIIGSRALDTAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALRNLVDSGDGRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKLLLDFGADPEVADDRGRTALDLAREILKATPKGNPMQFGRRIGLEGVVRVLEGAVFEYVEAQEILEQRGKGENLEYLVRWKDGEANEWVKAKFVAEDLVRDHEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLDEPTWEPEENVDPDLVKAFEETNKQAQPNSNGPAVVVSNQDGP* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0259 424 MobiDBLite consensus disorder prediction 401 424 - -
Pvu11g0259 424 Pfam Ankyrin repeats (many copies) 215 270 IPR002110 GO:0005515
Pvu11g0259 424 SUPERFAMILY Chromo domain-like 354 406 IPR016197 -
Pvu11g0259 424 Pfam Chromo (CHRromatin Organisation MOdifier) domain 358 402 IPR023780 -
Pvu11g0259 424 SUPERFAMILY Chromo domain-like 112 165 IPR016197 -
Pvu11g0259 424 Gene3D - 352 404 - -
Pvu11g0259 424 ProSiteProfiles Ankyrin repeat region circular profile. 229 261 - -
Pvu11g0259 424 SMART ANK_2a 160 191 IPR002110 GO:0005515
Pvu11g0259 424 SMART ANK_2a 195 224 IPR002110 GO:0005515
Pvu11g0259 424 SMART ANK_2a 229 258 IPR002110 GO:0005515
Pvu11g0259 424 Gene3D - 160 301 IPR036770 -
Pvu11g0259 424 ProSiteProfiles Ankyrin repeat region circular profile. 195 227 - -
Pvu11g0259 424 ProSiteProfiles Ankyrin repeat profile. 229 261 IPR002110 GO:0005515
Pvu11g0259 424 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 48 407 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Pvu11g0259 424 SUPERFAMILY Chromo domain-like 304 351 IPR016197 -
Pvu11g0259 424 SMART chromo_7 114 166 IPR000953 -
Pvu11g0259 424 SMART chromo_7 304 350 IPR000953 -
Pvu11g0259 424 SMART chromo_7 354 405 IPR000953 -
Pvu11g0259 424 Gene3D - 302 351 - -
Pvu11g0259 424 Gene3D - 112 159 - -
Pvu11g0259 424 PANTHER HOMEOBOX PROTEIN WARIAI 48 407 - -
Pvu11g0259 424 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Pvu11g0259 424 ProSiteProfiles Chromo and chromo shadow domain profile. 356 412 IPR000953 -
Pvu11g0259 424 SUPERFAMILY Ankyrin repeat 151 272 IPR036770 -
Pvu11g0259 424 MobiDBLite consensus disorder prediction 403 424 - -
Pvu11g0259 424 CDD CD_CSD 355 402 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0259 185 270 CAMTA Transcription Factor Family AT5G09410 36.957 7.11e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0259 K12271 - gmx:100818382 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0259 11 2112554 2114278 Pvu11g0259 11 2112554 2114278 ECH