Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0246 ATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGCTTAGAGAAATGAAATCCGAGGAAAGGGGTTTGTACTTGATCCATTTGCTGCTCACCTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAACACCACACTAGAGCAAATTTCCCTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATCGCTGCTTACTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACTAGAGTGACTATGCTATCTGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTAAAGGTGGCATATGTTCTCACAAATCAGGCCATCATTGAGGCCATGGAGGGGGAGAAAGTGATTCATGTAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCTCTCCTCCAAGTTTTGAGTGCACGTCCCGAAGGCCCTCCTCATTTGAGAATCACAGGGATTCATCAGAAAAAGGAGATTCTGGATCAGGTAGCTCACAGACTAACCGAAGAAGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTGGTCAGCAAACTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCATTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTGGGATGATGAAGCCTTAAAGAGAAAATCTCCCCGTCTGTTAAAAGGCTCAAGCGGAATTCACCTGCAAAGAGTCCTGCCACTGAGCCAAAGCACATTGGGTGATATGCTTGAGAAAGATATGGTCAATGGCTACACCGCAAGTCCTGACTCAACCTCCTCATCACCAGCTTCTTTAACTACTTCCAATTCAATGAATATGGAGAGCTTTCTCAGTGCCTTATGGGGTTTATCACCAAAGGTCATGGTTGTGACAGAGCAAGACTGTAACCATAATGGTCCAACACTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCTAGAACATCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTTGGGGAGGAAATAAAGAACATTATTGCTTGTGAGGGGACTGAAAGAAAGGAGAGACATGAAAAGCTTGAGAAGTGGTTCCAGAGATTTGATCAAGCTGGGTTCGGTAATGTGCCTTTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCATCCAGAGCTATGGTTGTGAAGGATATAGAATGAGGGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGGCCAATGTTTTCAATATCAGCTTGGAGATCAAGGAAGTAA 1368 0.4335 MMSLSPSLGSPNNLLLREMKSEERGLYLIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIIEAMEGEKVIHVIDLNAAEAAQWIALLQVLSARPEGPPHLRITGIHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDEALKRKSPRLLKGSSGIHLQRVLPLSQSTLGDMLEKDMVNGYTASPDSTSSSPASLTTSNSMNMESFLSALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGTERKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFIQSYGCEGYRMRDENGCVLICWQDRPMFSISAWRSRK* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0246 455 PANTHER SCARECROW-LIKE PROTEIN 3 1 454 IPR030008 GO:0003700|GO:0005634|GO:0009739
Pvu11g0246 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 454 IPR005202 -
Pvu11g0246 455 ProSiteProfiles GRAS family profile. 19 452 IPR005202 -
Pvu11g0246 455 Pfam GRAS domain family 28 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0246 Pvu-Chr11 1986300 1989000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0246 16 455 GRAS Transcription Factor Family AT1G50420 66.517 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu11g0246 GRAS 4.3e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0246 - - gmx:100814131 838.18