Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0244 ATGGAGTTCGTGGGGAAGACCGTTAAGAAAGAGGTGAAGGGGGTTGGGATTGTTTCGGGAACAGTGAAATCGTACGACCCTTCCTCTGGTTTTTTCGAGATCCTTTACGAACAAGGTGATTCGGAGGAGTTGGAGTCCTCTGACGTCGCTTCTCTCTTGCAATTGCAACCGGAGAGTGCCAAGGCCAAGCCTCGAGTCGGGCGGAAACCTAAGAAGCGTCGCCGCGTCGAGCGGCAGGGCGATGCTGGAGCAGGTTCAGGTAATGTTGGAGAGAATTTGGTGGCGGAGGGTGGTGATTTAAGGGGGGTTTTGGATGGGCATGTTTCTTCTGCTGGTGGTGGGGGTTTGGGTTTGGAGAGTGGTGAGTTAGAGAGAATTTTGGATGGTGTAAGTAAGAATAGAGGGAGTCCGGAGGGCAATGTTAATGGGAGTGAGGAGGTAAACGGGGTTAGAGAAAGTTTGAGAGAGGAAATTGGGTTAGAAGATAGTTTGAACAAGAGTTTATCTAGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAGGCTTAATCTGGATGAGGATTTAAATTTAAATGATGGGTGTAGTTTGCCTCTTGAGGCTGAGGATGGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTGAGTAATGAGGATGATGTTGGTGGCCCGAATGTGGGTCACTTGGGTTCGGGAGCAGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTATGTGAAGATGGTAAGGAAACACGGTGTGATGACCTCAGAAATGGACATTCTGAGGTGGGTAATGTTTTGTTTGGTAAGATGGGGCTGCCCCAAAAGGAAGAGATATATGTTAATAATAGTTCTGTGCAAGGTGGCGGTATTAATGGTAATTTGAATCACGCCTTTGATGCGGTTAAATTGGAGGGAATTCATGTTTCTTTTGATCATCCATCTAAAGATGGTTCTTGGTGTTTGGTTGAGGAAAATGGAGGAGCCAGTCGCAAAGAAGACGCAGGGGCTATTGATTCTCTTCAGATTTCAAGTGCAATATCTGTTAGGGATTCAGATTTTGGGGAGGCTCAGCAAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATAAATACCAAGATGATGCAGGAACTCCTTGCAAACAAGAAAAATTCCAAGATGTTCCAGGAAGTCCACGCAAACGAGAAAATAGCAGAAGGAAAAGAAGAAAATTATCAGATAATCCAGAAGCCGTGCCAGAAACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTATAAAACAGGTTTCAAGCATCGTTGAAGTGGAAGTGGCTGATGATGATCCTTTGGTAACCTTGGGAACCGATGCCTTAACAGAAGAAAAGCCTCTAATCCCTGGTTCTCAGAAATCTGAGCAATATGACGATTGTCCGAAATACAAGCAATACAACAATCCTCTTCCAAAGCTGCAATTGCCCCCGTCTTCTACAAATTTGAATTTAGACGACGTTCCTGTTCTTGAACTTTTTTCTATTTATGCCTGTTTCAGATCTTTCAGTACTTTATTATTTTTGAGTCCATTTGAGCTGGAGGATCTTGTAGCTGCACTGAAGTCTGAAATTCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCGAATCTGCATCGAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCGGAGTACCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATCTTAAACGTCTAATGTTCATAACTGATTACTACAAACAACCTGTAATTGTGAAGGTTGAGATTCTCCAGTACCTGTGTGATGAGATGATTGAATCGGAAGCTATAAGGTCAGAGCTTAACAGAAGATCTTTGGTGGCGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACTCTGGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTAGATGACACGACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCACGATGTGTTGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTCGATGAAGTCACGAAGGTCACTTCGAGGAGCAGACTTATTAGGGATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCGGTTACCTGTTAGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTACTACCACCAAAATGATATACATATAGTAATTGAAGCTCTAAAATCTATGCATCCTTTATATGGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAGAGGTGACTTGAGTTTGGGGGATAGTGTCTTGAATCAAATTTCCGGCAAGAACATGCAGATGAAGGGAGAATATTCTACTTTGTATACATCTTTGGCTCCTTTTACTTCAGAGACATGTTTGAACAAGAAGCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTATTGACTGTTGTATGCGAATTGGCCAAGACTTTCCAAAAGTTGGGAACTGCCTAGACTCGACAACCACCATAGAAAGTCATTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGACGAGAACAGGCATCAACAATGTTCAGATGTATGGGCTCAATGATTTCAGTAGATGTAATGAATCCCTGAATCAGCCAGGAGTACCAGAAAGACTACATCCCGATTGTTCTTTGACATCTTCCAGCTTGGATGTGGGACATAAAATAAATTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCGGACAGTAAGGATACTTCAGAAGCACCTTGTGGAATTGACTATGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCGCAGGAGTTGATGTGTAAGTTGCCTGAAAAGACGAATAAGATTCTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAGCAAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCAACCTGGATGCAGCTGCACAAAAAGAAAAATGTGGATGGTGCTTTACTTGCAAAGCTGCTAATGAAGATAGGGATTGTTTGTTTAATTCTGTTGTGAAACCTGTTTGGGAAGTGCCTAATAACACTTTGGTTGGGCTTCAACCCAGGAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTACTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTCTGACGACATCTGATTTTATTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGATCCGCTGTTCATATTGTGGTATCACGCACATCTTCCAGACATGGTATTGGAAAGAAAAGGGTCAGGAATTCAGATACTGAAACCAGTTCATCTTCAAACGGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCACTCCTTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAATAAGATACCAGGAATTTTATATCTTGAGAATTCCGACTTTGCACGGAGAAGCAGATTTGTTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGCGCTGAGCAGCTTGCTTTACAGATTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATAGTACGCAGAAAGTGCACTGAAGGGCAATCTGTGAAATATCTTCTTGATTTTGGAAAGAGAAGGGCTATGCCAGATGTTGTTATTAAACATGGTTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAGTCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAAGAAAGAAGAATTGTTCGCAAGTCCACTGATAAGAAACTTGGAAAAGTTCTTGAGATTGGTAGAGTAAACAAGAAAATTCCTCAGGAAAGGGGATTTTCATATCTATTTACAAGATTGGAAAGATCTAATTGTCATCAATGCGCGCACTGCAACAAAGTTGTTTCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATACTTCCACAAGAGACATGTCAGGAAATCAGGTGGCACAAGAACTACTGGAAGCACATATTCATGTCACAAATGTCAGGATGGGTTGCATGCAAAGACTAATACCAATAAAAGAAAAGTTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTATGCCTTCAGTTTGTAAATCAGTAAACCTCAAGGGCAACAAAAAGGCATTGAGTAAGGTACGGCAGGTAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGTCGCTCTACTAGGAAGGCCAAATCCTTGTATATGCAAAGTCAAATGAATGGTGGACGTAAAAAAGGAAAGCTTGGTAAAAAGAATGTGGGACGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGGCCTCTCCGGAGTCCATTGAAACTACTGGTGAATGTACGAAGTTAGCAGTTACTACAAGAAGGACAAGAACAAAATTCTGTAGCAGTTATTGGCTTAACGGTCTTCAGTTGTCTCGGAAGCCAAATGACGAACGAGTAATGCTATTTAAAGAGAAGAAGACTATTGTTTCCTCTGAAGATTTTTCTGGCTCTCTTGATTGTCTTAACTGCTGCCTTTGTTGTGGGAATGGACGCACCTTGAATTATATTGCGTGTGAAATATGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGAGAATGTCAAACAACTTATTGGATTTAAGTGCCATGTTTGTATTGATAGAACTGCTCCAATCTGTCCTCATATGAAACTTAATGCATTGTCTCGTCCTGAAAGCAATGCTGCAAATGAGTGTGCAGAGGAATTATGTAATCCTGTTTCTCTTCAACCTTTAAGTGAGGTTTGA 5277 0.4156 MEFVGKTVKKEVKGVGIVSGTVKSYDPSSGFFEILYEQGDSEELESSDVASLLQLQPESAKAKPRVGRKPKKRRRVERQGDAGAGSGNVGENLVAEGGDLRGVLDGHVSSAGGGGLGLESGELERILDGVSKNRGSPEGNVNGSEEVNGVRESLREEIGLEDSLNKSLSRNVSCVKDGLDLNARLNLDEDLNLNDGCSLPLEAEDGLKRRDCIDLNLDVSNEDDVGGPNVGHLGSGAEAMQRECNFDLNVEVVCEDGKETRCDDLRNGHSEVGNVLFGKMGLPQKEEIYVNNSSVQGGGINGNLNHAFDAVKLEGIHVSFDHPSKDGSWCLVEENGGASRKEDAGAIDSLQISSAISVRDSDFGEAQQVDCPSEGGIAIIHKYQDDAGTPCKQEKFQDVPGSPRKRENSRRKRRKLSDNPEAVPETVLRRSSRRASAIKQVSSIVEVEVADDDPLVTLGTDALTEEKPLIPGSQKSEQYDDCPKYKQYNNPLPKLQLPPSSTNLNLDDVPVLELFSIYACFRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEYLSNEGCESASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKRLMFITDYYKQPVIVKVEILQYLCDEMIESEAIRSELNRRSLVAETDMGFDQNMYFDSGKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRASMKSRRSLRGADLLGMDMDGSVYFNSCGYLLVSSSSEAGPLFYYYHQNDIHIVIEALKSMHPLYGGILMAIYKHWDIRGDLSLGDSVLNQISGKNMQMKGEYSTLYTSLAPFTSETCLNKKQANDQGKLDENSTIDCCMRIGQDFPKVGNCLDSTTTIESHCVASDGSADTTQTRTGINNVQMYGLNDFSRCNESLNQPGVPERLHPDCSLTSSSLDVGHKINLRSVGASSTPSPDSKDTSEAPCGIDYVNYYSFARTASFVAQELMCKLPEKTNKILAMSEEEFISDQAKVIMKKSTNFCWPSIPNLDAAAQKEKCGWCFTCKAANEDRDCLFNSVVKPVWEVPNNTLVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLTTSDFIRVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAVHIVVSRTSSRHGIGKKRVRNSDTETSSSSNGASGLGMYWWRGGRLSRKLFNLKALPHSLVTKAARQGGCNKIPGILYLENSDFARRSRFVAWRAAVEMSTSAEQLALQIRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLLDFGKRRAMPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEERRIVRKSTDKKLGKVLEIGRVNKKIPQERGFSYLFTRLERSNCHQCAHCNKVVSMRDAVRCLHCKGYFHKRHVRKSGGTRTTGSTYSCHKCQDGLHAKTNTNKRKVDSKLQKIQAKKRKTMPSVCKSVNLKGNKKALSKVRQVRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRKKGKLGKKNVGRKKGKQSKSKKVASPESIETTGECTKLAVTTRRTRTKFCSSYWLNGLQLSRKPNDERVMLFKEKKTIVSSEDFSGSLDCLNCCLCCGNGRTLNYIACEICGDWFHGDAFGLNVENVKQLIGFKCHVCIDRTAPICPHMKLNALSRPESNAANECAEELCNPVSLQPLSEV* 1759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0244 1758 PANTHER PHD FINGER FAMILY PROTEIN 1 1732 - -
Pvu11g0244 1758 ProSitePatterns Zinc finger PHD-type signature. 706 747 IPR019786 -
Pvu11g0244 1758 Pfam PHD-finger 706 747 IPR019787 -
Pvu11g0244 1758 ProSiteProfiles DDT domain profile. 508 568 IPR018501 -
Pvu11g0244 1758 SMART testlast3 508 568 IPR018501 -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 1543 1605 - -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 1543 1573 - -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 389 405 - -
Pvu11g0244 1758 CDD PHD1_AIRE 705 747 - -
Pvu11g0244 1758 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1732 - -
Pvu11g0244 1758 SUPERFAMILY FYVE/PHD zinc finger 690 748 IPR011011 -
Pvu11g0244 1758 SMART PHD_3 705 748 IPR001965 -
Pvu11g0244 1758 SMART PHD_3 1445 1492 IPR001965 -
Pvu11g0244 1758 SMART PHD_3 1670 1716 IPR001965 -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 1578 1596 - -
Pvu11g0244 1758 ProSiteProfiles Zinc finger PHD-type profile. 703 750 IPR019787 -
Pvu11g0244 1758 SUPERFAMILY FYVE/PHD zinc finger 1657 1718 IPR011011 -
Pvu11g0244 1758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 770 IPR013083 -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 389 430 - -
Pvu11g0244 1758 MobiDBLite consensus disorder prediction 55 92 - -
Pvu11g0244 1758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1637 1721 IPR013083 -
Pvu11g0244 1758 Pfam DDT domain 512 564 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0244 Pvu-Chr11 1954675 1970219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0244 1 1727 PHD Transcription Factor Family AT5G12400 39.253 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu11g0244 DDT 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0244 - - vun:114169688 2967.95