Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0197 ATGGGGAGAGCACCATCCAGTGATGAAAGTGGCTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTACATTCACAAACATGGCCATGGCAGTTGGAGAGCACTTCCAAAGCTTGCAGGATTGAACAGGTGTGGCAAAAGTTGCAGGCTAAGGTGGACAAACTATTTGAGGCCTGACATCAAAAGAGGAAAATTCTCTCAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGCAACAAGTGGTCAGCTATAGCAGGTCATCTTCCAGGTAGGACTGATAATGAAATCAAGAACTTGTGGAACACTCATTTAAAGAAAAAGCTTCTACAAATGGGGTTGGATCCAGTGACTCATCGTCCAAGATCAGACCACCTTGATCTTCTATCCAGTCTTCAACAGTTGCTGGCTGCTACAGACATTTTCACAAACAGTTGGGACATTAATGTTGCAAGGCTGCAATCAGATGCCACAGAACTAGCCAAACTCCAATTGCTGCATAACATACTTCAAGTCCTTGGGGCCAATCCTTCCTCAAACATGGACTTGCTCAATCCCTTTGGACCATCACTGAATGAAGTTTTGGGATTGGATCAGTCCAAGCTCCAAAACCCTTACAATGGTTCAACTGGTTTTGTTTCTCAGAATCAGCCAAACTTCCAAAGCTTTGAAGCCCCTTCTCAGCAGCAAGGTCTACCTAACCACATGAAATCTGAAAAGGTTGATGAACAACTTGGTGCCTCATATTCTCTTCCAACACCATTAGATTCTCTTCCAAATCTAGTTTCAGCATCACCAGAATGTTCAGCTGGGAAGGAAATGGAAAACAAGGTAAACCCAAATGAGTTTTGTGAGCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTATGAAGAAGTAACTGATGCTTATTGGAAAGATCTCATGGAGCAATAA 969 0.4303 MGRAPSSDESGLKKGPWTPEEDNILVDYIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHRPRSDHLDLLSSLQQLLAATDIFTNSWDINVARLQSDATELAKLQLLHNILQVLGANPSSNMDLLNPFGPSLNEVLGLDQSKLQNPYNGSTGFVSQNQPNFQSFEAPSQQQGLPNHMKSEKVDEQLGASYSLPTPLDSLPNLVSASPECSAGKEMENKVNPNEFCEPSSTSTTFEMWGDFMYEEVTDAYWKDLMEQ* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0197 322 Gene3D - 69 116 - -
Pvu11g0197 322 CDD SANT 69 112 IPR001005 -
Pvu11g0197 322 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu11g0197 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu11g0197 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 322 - -
Pvu11g0197 322 CDD SANT 16 61 IPR001005 -
Pvu11g0197 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu11g0197 322 SMART sant 13 63 IPR001005 -
Pvu11g0197 322 SMART sant 66 114 IPR001005 -
Pvu11g0197 322 PANTHER MYB TRANSCRIPTION FACTOR 3 322 - -
Pvu11g0197 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu11g0197 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu11g0197 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu11g0197 322 Gene3D - 11 67 - -
Pvu11g0197 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0197 Pvu-Chr11 1533359 1534874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0197 1 321 MYB Transcription Factor Family AT5G16770 50.872 6.03e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu11g0197 Myb_DNA-binding 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0197 K09422 - gmx:547488 488.804