LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0157	ATGGCTCCATCTTCTGTCATTGTCACTTCCCGTTTTCATGAATCCATCACTCGCCATGCACTTCGCTCCTATCTCTCTGAGTTTATCTCCACTTTCTTCTATGTCTTTCTTGTCGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTGCCATTGCAAGTGCTTTTGCTCTGTCTTGTGTTCTGTATATTGCATGGGACATCTCTGGTGGACACGTGAATCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCTATCTTTTACTGGGTTGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACGGGGTTTGGAGCATCAGTGTTGGAGGGTATTCTGACATTTGTTTTGGTGTTCACAGTGTATGCAGCCAGGGACCCTAGGCGTGGTCCAATGAGTCCTAATGGCATACTTTTAGTTGGCTTCGTGGCTGGGGCAGGTGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCAGCAACCATTGCAGGGTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATTGGTGCCACCATAGCTGGTCTTCTTTATGACAATGTGCTGTTCAGTTCTTTTCCTACAGAGCTTTCAGAAGGAATTGGGGTGTGA	759	0.4796	MAPSSVIVTSRFHESITRHALRSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVAIASAFALSCVLYIAWDISGGHVNPAVTFAMAVGGHVSVPTAIFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVFTVYAARDPRRGPMSPNGILLVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFSSFPTELSEGIGV*	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0157	252	SUPERFAMILY	Aquaporin-like	12	244	IPR023271	-
	Pvu11g0157	252	PANTHER	AQUAPORIN TIP5-1-RELATED	7	242	-	-
	Pvu11g0157	252	ProSitePatterns	MIP family signature.	84	92	IPR022357	-
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	22	41	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	66	90	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	103	122	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	148	166	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	180	202	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PRINTS	Major intrinsic protein family signature	217	237	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	PANTHER	AQUAPORIN-8	7	242	IPR034294	-
	Pvu11g0157	252	Pfam	Major intrinsic protein	18	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu11g0157	252	Gene3D	Glycerol uptake facilitator protein.	5	244	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0157	Pvu-Chr11	1206644	1208839	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0157	1	249	Major Intrinsic Protein MIP	AT3G47440	63.454	2.86e-106	306

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0157	K09873		-	gmx:100801448	432.565

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu11g0157	11	1206644	1208839	Pvu11g0157	11	1206644	1208839	ECH