Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0087 ATGGAAGAGGAGGGGTGGAACGGGAAGAGACCCTCCGAGCCACGTCCCTGTACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCCCTCTTCGGCCACATGCGGTGCCACCCAGAGCGTCACTGGAGAGGGATCAACCCTCCCCCCAATGCAAGAAGACATCAGCAGCAGCATCATCATCAGCATCCACAACAACAGCAGCAACACACCATGATAATGACCCAGGAAGACCACGAGGTCGCTGCATGTTTGCTTCTGCTTGCAAATTCCAACAAAGAGAAAGGGAAAGAGAAAGAGGAAGAGTTTCATCAGTGGCAGTTCGAGTGCTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCAAACACTGGTAATGCAGGGATAGGCTTAGGGTTAGGCATAGGGAGTAGTGGGAAGTGTGAAGAGGAGAATGTGAACATGAGTGGTGGTGATGGACACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGCCATTGGGAGAATCAGAAAGGTGATAACCTTCTTCTTCTTCACTCACCCAAGTCCTCCATAGACTTGAACTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 678 0.5265 MEEEGWNGKRPSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNARRHQQQHHHQHPQQQQQHTMIMTQEDHEVAACLLLLANSNKEKGKEKEEEFHQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNAGIGLGLGIGSSGKCEEENVNMSGGDGHKCSICMRVFSTGQALGGHKRCHWENQKGDNLLLLHSPKSSIDLNSPPLTLDLRLGL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0087 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 37 IPR013087 -
Pvu11g0087 225 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 9 217 - -
Pvu11g0087 225 MobiDBLite consensus disorder prediction 41 70 - -
Pvu11g0087 225 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Pvu11g0087 225 Gene3D Classic Zinc Finger 104 191 - -
Pvu11g0087 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Pvu11g0087 225 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 9 217 - -
Pvu11g0087 225 SUPERFAMILY beta-beta-alpha zinc fingers 107 191 IPR036236 -
Pvu11g0087 225 Pfam C2H2-type zinc finger 169 193 - -
Pvu11g0087 225 Pfam C2H2-type zinc finger 16 39 - -
Pvu11g0087 225 Pfam C2H2-type zinc finger 107 130 - -
Pvu11g0087 225 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Pvu11g0087 225 SMART c2h2final6 169 191 IPR013087 -
Pvu11g0087 225 SMART c2h2final6 107 129 IPR013087 -
Pvu11g0087 225 SMART c2h2final6 15 37 IPR013087 -
Pvu11g0087 225 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Pvu11g0087 225 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Pvu11g0087 225 SUPERFAMILY beta-beta-alpha zinc fingers 13 40 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0087 Pvu-Chr11 614676 615353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0087 11 225 C2H2 Transcription Factor Family AT4G35280 50.220 4.38e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu11g0087 zf-C2H2_6 6.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0087 - - vun:114195192 367.081