Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0085 ATGGCCACAGTTTCTTCGGATGATAAGGTTTTTGGTCAATTTACATCAAATCTAAGGGTTCTTGCCATTGACACTGACCCTTCAGTTCTTGAATTCATCAAGAAAATCTGCAATGAATGTGGCTATGAAGTTATGACATGCACAGAATCGTTACGTGCTGCTGAAATCTTCAGGGACAGAAAAGAGAGTTTCAATTTGGTGCTGATGGAGGTTCATATGCCAAACATGGATGGATATGAATTCCTTGTGAACCAGAAAATGGATGTTCATGTCATCATGATGTCTTTTGATGGTGATAAGAAATCTGTGATGAAGGCTGTTAAACTTGGAGCTTGTGATTATTGGATCAAGCCTTTGCATGAGGATCGAATCAAGAATATGTGGACACATATTGTTAGGAAGTCCTTGAGTGAGAACAAGATGCAGAAAAACATTGTTGGCAACTTGGAAGATGATGGTGATGATCAGAGAAGAGTGATCAGTGATGATTCTACATTTGTTTTTTCTTCCACTGTTGAAATTCCAAGAGAAGTTGATAATGTTGGTGAATCTGAGAACTGTGGCAGAAAAAAGGCTCGAATAGTGTGGACATCAGAACTGCATCGTAAATTTGTTGAAGTTGTGGATCAAATTGGACCTGCTAATGTTGTGCCAAACAAAATTCTTGAACTCATGAATGTTCCTGGTTTGACAAGAAACAATGTTGCTAGTCATTTGCAG 720 0.3847 MATVSSDDKVFGQFTSNLRVLAIDTDPSVLEFIKKICNECGYEVMTCTESLRAAEIFRDRKESFNLVLMEVHMPNMDGYEFLVNQKMDVHVIMMSFDGDKKSVMKAVKLGACDYWIKPLHEDRIKNMWTHIVRKSLSENKMQKNIVGNLEDDGDDQRRVISDDSTFVFSSTVEIPREVDNVGESENCGRKKARIVWTSELHRKFVEVVDQIGPANVVPNKILELMNVPGLTRNNVASHLQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0085 240 Pfam Myb-like DNA-binding domain 196 240 IPR001005 -
Pvu11g0085 240 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Pvu11g0085 240 SUPERFAMILY Homeodomain-like 189 240 IPR009057 -
Pvu11g0085 240 Gene3D - 188 240 - -
Pvu11g0085 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 238 IPR045279 GO:0009736
Pvu11g0085 240 CDD REC_typeB_ARR-like 20 132 - -
Pvu11g0085 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 240 IPR006447 GO:0003677
Pvu11g0085 240 Gene3D - 17 147 - -
Pvu11g0085 240 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Pvu11g0085 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 240 IPR017930 -
Pvu11g0085 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 238 - -
Pvu11g0085 240 SUPERFAMILY CheY-like 16 140 IPR011006 -
Pvu11g0085 240 SMART REC_2 18 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0085 Pvu-Chr11 605283 606280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0085 3 240 Response Regulator Gene Family AT2G25180 38.247 2.07e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu11g0085 Response_reg 1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0085 - - pvu:PHAVU_011G008200g 485.723