Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0068 ATGGACGCTCTCGATTCAACCCCAAATCTCCCTCCTCTCCATCCCTATGATCCTTCCCCGCCGAACCACGCGCCATCGGAGTATCACAACTCCTCACAACACCAATCGGAAACCGGACAAAACGGTAATGGTACCGGCGATGGAAGACTGTCGGAGAACGGTCAGGGACCTTTGGATAACAACGGCTTGCATCCTCAGATTTCGAAGCCATTGCTCTCTGAAGGATTGACGCGTAGCGGCACCGACAGGGATCAATCCGGCGGCGAAGAGGAGACCACGAGCAAGCGCCGCCGGCGGAGCAGGTGGGATCCGCAACCGGAATCGAATGACCAGAGCGGCCAGAGTGGCGGGGAATTGGGGTCCGGGCCGAAGAAGAGGAAGTCTCGCTGGGCCGACGACGAGCCCAAGCCGGTGATTCAACTTCCTGATTTCATGGGCGGTATTGAATTCGATCCCGAGATTCAGGCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTACCCTTAGATGACCGCCCCGAAGGTGCTCGATCTCCTTCGCCTGAGCCGATATATGATAACATGGGCATTAGGATTAACACTAGGGAATGCCGGGCGCGTGAGAGATTGCAAAAAGAGAGGCAGGAGATTATATCTCAGATTATAAAGAAGAACCCCGCGTTTAAGCCACCAGCAGATTATAGGCCGCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTTATTGGGCTTATTATTGGTCCCAGAGGTAACACTCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGATCAGTGAAAGAGGGTAGGCTACAGCAGAAGAGGGATTTGAAGCCTGATCCATCGGAGAATGAAGATTTGCATGTTTTGGTAGAGGCTGAGACGCCGGAGTCGCTTGAGGCCGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCACAAGAGGCAACAGCTTAGGGAACTTGCTGCATTGAATGGGACGATCAGGGATGAAGAGTACTGCAGGCTTTGTGGTGAACCTGGTCATCGCCAATATGCTTGTCCTACCAGGACTTCCACTTTTAAGAGTGAAGTTGTCTGTAAACATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGAAAGAAGATGGATGATGAGTATCAGAATTTCCTAGCAGAGTTGGGTGGTTCGGTTCCTGAATCTGCAACTAAGCAAACCAGTACCTTGGCGATTGGAGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCCGCTACGGCTGGTGGTTTGGCTCAAGCTGGCTTAGGGGCTGCTGCAGTTAAAAAGGAAATCGATGATACAAATTTGTACATAGGATATTTGCCGCCCAGTCTTGACGATGATGGCTTAATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTGATCAAGGATCGAATGTCGGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAACGGTTACCGCCTCGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTGCCTCCTGGCCCACCAGCATCTGCTGTGCCCACTTATCCTGTTCCAAGCCAGCCACTCGGTGGTTATCCATCCCAACAGTATGCTGGTGGTGGCCCCCTTGGGACTGCTCCTCCTGGGAGTTACGGTGGTACTCCAGTTCCATGGGGACCCTCTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCTCCTCCTGGGTCAACCATGTATCCACCTATGCAAGGTCAACCTATGCCTCCATATGGGGTTCAATATCCTCCTCCTGTGCAGACTGGCCCTCCTGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAATTGCAGCAGAGTTACCCACCCGGAGTGCAGTCTGACAATAGTACCTCAACTCAGTCTGTAGCAGTAAATGTATATGGTAACTCGGTACCTTCAATGCCACCTGCAGCCCAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAACGCAGTTCCTCCTCCACCTCCCCCTCCCGCCCCCATTCCTGTTTCAACTTCAGACCAATCTCACAATATTGCTAATGTTCCTTGGGCCAATAGTTCTCTTGTTCCACCACATGCTTCATCGGCAGACAAGACAACATATGGTACAGATTCCCTTAGCATTGGAAATGTGCCTAGGACCACAAATCCTCCAGTGCCTCCTCCTCCTTCATCAGCTGAGAAGACTTCATATGGTACTGATTCAGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2412 0.5008 MDALDSTPNLPPLHPYDPSPPNHAPSEYHNSSQHQSETGQNGNGTGDGRLSENGQGPLDNNGLHPQISKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGQSGGELGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTRECRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSATAGGLAQAGLGAAAVKKEIDDTNLYIGYLPPSLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGGYPSQQYAGGGPLGTAPPGSYGGTPVPWGPSVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVQTGPPGAPSQPATSSELQQSYPPGVQSDNSTSTQSVAVNVYGNSVPSMPPAAQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSHNIANVPWANSSLVPPHASSADKTTYGTDSLSIGNVPRTTNPPVPPPPSSAEKTSYGTDSEYEKFMAEMK* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0068 803 MobiDBLite consensus disorder prediction 24 62 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 741 792 - -
Pvu11g0068 803 Gene3D - 358 410 - -
Pvu11g0068 803 Pfam KH domain 252 325 IPR004088 GO:0003723
Pvu11g0068 803 MobiDBLite consensus disorder prediction 555 570 - -
Pvu11g0068 803 ProSiteProfiles Zinc finger CCHC-type profile. 359 373 IPR001878 GO:0003676|GO:0008270
Pvu11g0068 803 MobiDBLite consensus disorder prediction 625 678 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 741 771 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 555 604 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 122 136 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 653 678 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 1 140 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 83 105 - -
Pvu11g0068 803 SUPERFAMILY Retrovirus zinc finger-like domains 355 401 IPR036875 GO:0003676|GO:0008270
Pvu11g0068 803 CDD SF1_like-KH 238 354 - -
Pvu11g0068 803 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 237 363 IPR036612 GO:0003723
Pvu11g0068 803 SMART rrm1_1 475 548 IPR000504 GO:0003723
Pvu11g0068 803 PANTHER RNA-BINDING PROTEIN RELATED 762 803 IPR045071 -
Pvu11g0068 803 PANTHER RNA-BINDING PROTEIN RELATED 50 763 IPR045071 -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 625 652 - -
Pvu11g0068 803 Gene3D - 449 556 IPR012677 -
Pvu11g0068 803 ProSiteProfiles Zinc finger CCHC-type profile. 385 399 IPR001878 GO:0003676|GO:0008270
Pvu11g0068 803 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 552 IPR000504 GO:0003723
Pvu11g0068 803 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 762 803 - -
Pvu11g0068 803 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 50 763 - -
Pvu11g0068 803 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 545 IPR000504 GO:0003723
Pvu11g0068 803 ProSiteProfiles Type-1 KH domain profile. 252 324 - -
Pvu11g0068 803 SMART kh_6 237 329 IPR004087 GO:0003676
Pvu11g0068 803 MobiDBLite consensus disorder prediction 171 192 - -
Pvu11g0068 803 MobiDBLite consensus disorder prediction 282 303 - -
Pvu11g0068 803 Pfam Splicing factor 1 helix-hairpin domain 126 233 IPR032570 -
Pvu11g0068 803 Gene3D K Homology domain, type 1 229 357 IPR036612 GO:0003723
Pvu11g0068 803 SMART c2hcfinal6 384 400 IPR001878 GO:0003676|GO:0008270
Pvu11g0068 803 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
Pvu11g0068 803 SUPERFAMILY RNA-binding domain, RBD 470 563 IPR035979 GO:0003676
Pvu11g0068 803 Gene3D - 151 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0068 Pvu-Chr11 484328 488320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0068 474 605 Eukaryotic Initiation Factors Gene Family AT3G16380 30.935 1.63e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0068 K13095 - gmx:100800982 1264.21