Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0061 ATGGACTTGAAGTCAAATCATACCCCTGTTCTCACCGATTCTGCACCCGTAACAAAGTCTAGGCTGTGCGTGCATTCCAGTTTGTTGCCTTACACCCATTCCGGGGCAGCCTTTACGCATGGAATGTTACTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCGCCTCCAGCCAGAAAGATAACAAAGGATGTTAGCCATGGGTTTGCATCATCTGATTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCTGCGCTTACATGTTTTGATCAAATCACAAACTTTGCAAAAGGGAAAAGAATTGCATTGTTTATGGATTATGACGGAACTCTTTCCCCAATTGTGGATAATCCTGACTGTGCGTTCATGTCGGACAATATGCGGGCTTCTGTTAAAAAGGTGGCGGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTATATAAATTTGTAGGACTAACGGAACTCTACTACGCTGGTAGTCACGGGATGGACATCATTGGCCCTGTTAGACAATCTGAATCTGATAATCACCCAAATTGTATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCGGAATTTCTGCCCATGATTAATGAGGTCCTCAAGTCTCTTGATGAGTGTACCAAAGACATTAAAGGTGCTAAAGTAGAGAACAATAAATTTTGCGTATCTGTGCACTACCGGAATGTTGATGAAAAGTATTGGGATGTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGATATCCGCGTTTGCGGTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCGAACAGACGAAGATGCATTTAAGGTTTTGAGAGAGGGGAATAAAGGTTATGGGATCTTGGTGTCTTCATCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCACTAGTGTTATGGAAGTCAAGCTGCTTAAAAAGTCTTATATAG 1170 0.4205 MDLKSNHTPVLTDSAPVTKSRLCVHSSLLPYTHSGAAFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVSHGFASSDSDTAGAYFSWLLKYPSALTCFDQITNFAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRASVKKVAEYFPTAIISGRSRDKVYKFVGLTELYYAGSHGMDIIGPVRQSESDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLKSLDECTKDIKGAKVENNKFCVSVHYRNVDEKYWDVVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSSPKESNAIYSLRDPSEVMEFLKSLVLWKSSCLKSLI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0061 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
Pvu11g0061 389 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Pvu11g0061 389 CDD HAD_TPP 122 372 - -
Pvu11g0061 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Pvu11g0061 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Pvu11g0061 389 Gene3D - 121 204 IPR023214 -
Pvu11g0061 389 Gene3D - 220 386 IPR023214 -
Pvu11g0061 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Pvu11g0061 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0061 Pvu-Chr11 448579 454461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0061 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.071 5.93e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0061 K01087 - gmx:100819495 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0061 11 448579 454461 Pvu11g0061 11 448579 454461 ECH