LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0048	ATGTCGTCCAACCCTCCGCCGCCGTATTCTTCGCACAAACCCGCCAAAGACCATTCCGCCACGGCGATACCGTCGTCGCCTTCCACCAGAGCTAAACTCCGCAAGATCCCGCCCATTCCGATTCGACGGAGTAAGTTAGGCAATGAGGAGCAGGAAGAAGAGGAAGACGATGAACGCTCTGATTCTTCTTGCATCTTGCTCGCGTCCTCTTTAGGGCTGAATAACATTCGAACACGTTCTTCCTCTTCGCCTCTTCGCTATTCCTCCTCCGTTGGCGCTCCTTCCTTCATCACACAGAATGCTATCGCCATCAATGAGGCCGGATTTAGATCCAGATCCAATTCCCATCCAAAAAGAGACCTAGGGGGGATTATTCATTTGAATCAATCCAAATCGCTCAAAGCTCATTCGCAGCTCATTCCTGTGCTAGAGGGTCATCATGCAGCTTTCGCCAAAGAAATGCAATCCCCACGTTTTCAGGAAATTCTGCGACTTACTAGTGGACGCAAAAAGAGAAACCCTGATATCAAAAGCTTTTCCCATGAGCTCAACTCCAAGGGAGTTAAACCATTTCCAATCTGGAAACATCGTGCCTTTGGCCACTTGGAGGAAGTAATGTCGGCGATTAGAGCTAAGTTTGAAAAATTTAAGGAAGAAGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGTATTCTTGAAAAAAACTTAGTGTGTGATCGTGAATGGAGAGAGAAGTTGGAGGATCTGTTGGTTATTGCTCAACAATGTGCAAAGATGTCTCCTACCCAGTTTTGGATCAAATGCGAATCTATTGTTCAAAATCTAGATGACAAACGTCAAGAATTACCAGTGGGCATACTCAAGCAAGCTCATACACGCCTACTGTTTATTCTCACTCGTTGCACTCGATTAGTGCAATTTCAGAAGGAAAGCGGATTTGAACAAGACCACATTCTGGGTCTTCACCAACTCAGCGACCTGGGGGTCTATCCTGAGCAAATTTTGAAGGCTGCACAGCAGAATTCAAGTATTCCACTCGCTGTACACGAGACGGCTGAGAAACAGTTAAAAATGTCACATAGTAAAGAGAAAGAAAAACCGAAAACAACAAAGAGTAAAGCTGATCAACAAGTAAGTGTTGTGATTGACAACCCGGAGGTTGCTTCGGTCAAGAGTGTTGAATCAACTTCTGGCACCTATAGGATGTCTTCTTGGAAAAAGTTTCCATCTGCTGCTGAGAGAAAGCGAAAAGATCAAGATGCTGTAGATACCCCATCCAAAGGTGAAATGAACCACTTGCTAGTCAAAGATGAAAATGCTGAAAATTTGGATACTTCCTCTTGTCATCCTGAACATTCACAATCATCATCAAGAACACGAAAGGTTTCTTGGGGATTCTGGGGAGACCAGCAAAATCTTACATACGAGGATTCAATGATATGCAGGATTTGTGAGGTTGAAATACCGATTGTACATGTGGAGGAGCATTCGAGAATATGCACAATTGCGGATAGATGTGATTTGAAAGGTTTAACTGTAAACGAGCGGCTTGAAAGAGTTTCTGAAACCATTGAAAGGATACTAGAATCATGGACACCAAAAAGCACACCGAAAAGCACTGATACTCCTGGAGAAAGCTTTGACCTTGCCGCTTCAAATGTGCTTGAAGAGTTCAGCGATTTATCTCTAGAGGGAAATAACATGAGTTCTAGATGCTCTGAAGACATGCTCGACTCTACTACGGAGCCTGACAATACTTTTGTCATGGACGATCTGAACTTTTCACCCAGAATATCATGCGAAGCACGCATCTTCGTAAAACATGATCATGGAACAAAGGTATCTTCAGCTGGGAGCTTGACACCGAGATCACCATTGGTAACACCACGAACCACTCAAGTGGAAATGTTACTTAGTGGACGGAGAACACTGTCTGAACTTGAAAGTTGTGACCAGATAAGCAAGCTAGTTGAAATAGCCCGTGCTGTTGCAAATGTGAGCAACTGTGATTACAGTGCTCTGGAGTATATGCTTGATCGCTTAGAAGACCTGAAATATGCCATCCAAGACAGAAAAGTGGATGCACTTATTGTGGAGACTTTTGGACGACGAATAGAGAACCTTTTGCAGGAGAAATATATAGCTCTTTGCGGGCAGATAGAAGATGAAAAGGTGGACTCATCAACTAGCGTTGCTGATGAAGAGAGTTCAGTGGAAGATGATACAGTTCGTAGCCTTCGTGCTAGCCCTATTAATGCTTGTTCCAAGGACCGGACCACTATTGCGGACTTTAAAATAATAAAACCCATAAGTAGGGGTGCATTTGGGCGAGTTTTTCTTACCCGAAAAAGAGTAACTGGTGATTTTTTTGCTATAAAGGTTCTGAAAAAGGCAGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCAGAGCGAGACATACTTATATCTGTTCGAAATCCTTTTGTGGTCCGATTTTTCTACTCTTTCACATGTCGGGAAAATCTTTATCTAGTTATGGAGTATTTGAATGGTGGAGATCTTTATTCAATGTTGAGAAATCTAGGTTGCTTAGATGAAAATATGGCTCGAGTATATATTGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACTTGAAGCCAGATAACTTACTGATTGGTCAAGATGGCCATATTAAGTTGACAGATTTCGGGCTCTCTAAGGTTGGTCTTATTAACAGCACAGATGATTTATCAGCGCCATCATTTTCGGCCATCCTAGAAGACGATGAACCAAAACCTACACATTCTTTCAAACGGGAAGAGCGTCAAAGACAATCAGTGGTTGGCACTCCGGATTACTTGGCACCTGAAATACTTCTTGGCATGGGACATGGTGTAACTGCTGATTGGTGGTCTGTGGGTGTCATACTGTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCTGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCCAAGATTCCTGATGAGATGAGCTTTGAAGCATATGATTTGATAAATAAATTATTGAACGAAAATCCAGTCCAAAGATTAGGCGCAACAGGAGCTACAGAAGTTAAACGCCACGCCTTCTTCAAAGATATTAATTGGGATACACTAGCAAGGCAGAAGGCTATGTTTATTCCATCGGCTGAAGCTCTTGATACAAGTTATTTTATGAGCCGGTACATATGGAATCCTGAGGACGAACATTGTCTCGGAGTTAGTGATTTTGATGAGATTACTGAAACATGCAGCAGTGGTTCAGGCAGCGATATGCTAGATGAAGATGGTGACGAGTGTGGTAGTTTAGCAGAGTTCGGTGGTCCAGCTCTTGAAGTGCAGTACTCATTTAGTAATTTCTCATTTAAGAACTTGTCTCAGCTAGCTTCTATCAATTACGATTTGGTGATCAAGAACTCCAGGGAATCAACTCAATGA	3504	0.4252	MSSNPPPPYSSHKPAKDHSATAIPSSPSTRAKLRKIPPIPIRRSKLGNEEQEEEEDDERSDSSCILLASSLGLNNIRTRSSSSPLRYSSSVGAPSFITQNAIAINEAGFRSRSNSHPKRDLGGIIHLNQSKSLKAHSQLIPVLEGHHAAFAKEMQSPRFQEILRLTSGRKKRNPDIKSFSHELNSKGVKPFPIWKHRAFGHLEEVMSAIRAKFEKFKEEVDSDLGGFAGDLVGILEKNLVCDREWREKLEDLLVIAQQCAKMSPTQFWIKCESIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGFEQDHILGLHQLSDLGVYPEQILKAAQQNSSIPLAVHETAEKQLKMSHSKEKEKPKTTKSKADQQVSVVIDNPEVASVKSVESTSGTYRMSSWKKFPSAAERKRKDQDAVDTPSKGEMNHLLVKDENAENLDTSSCHPEHSQSSSRTRKVSWGFWGDQQNLTYEDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVSETIERILESWTPKSTPKSTDTPGESFDLAASNVLEEFSDLSLEGNNMSSRCSEDMLDSTTEPDNTFVMDDLNFSPRISCEARIFVKHDHGTKVSSAGSLTPRSPLVTPRTTQVEMLLSGRRTLSELESCDQISKLVEIARAVANVSNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIENLLQEKYIALCGQIEDEKVDSSTSVADEESSVEDDTVRSLRASPINACSKDRTTIADFKIIKPISRGAFGRVFLTRKRVTGDFFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDENMARVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSAILEDDEPKPTHSFKREERQRQSVVGTPDYLAPEILLGMGHGVTADWWSVGVILYELLVGIPPFNAEHPQQIFDNIINRDIQWPKIPDEMSFEAYDLINKLLNENPVQRLGATGATEVKRHAFFKDINWDTLARQKAMFIPSAEALDTSYFMSRYIWNPEDEHCLGVSDFDEITETCSSGSGSDMLDEDGDECGSLAEFGGPALEVQYSFSNFSFKNLSQLASINYDLVIKNSRESTQ*	1168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0048	1167	MobiDBLite	consensus disorder prediction	357	375	-	-
	Pvu11g0048	1167	MobiDBLite	consensus disorder prediction	407	433	-	-
	Pvu11g0048	1167	CDD	STKc_MAST_like	773	1058	-	-
	Pvu11g0048	1167	MobiDBLite	consensus disorder prediction	357	383	-	-
	Pvu11g0048	1167	ProSiteProfiles	Protein kinase domain profile.	767	1053	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g0048	1167	MobiDBLite	consensus disorder prediction	1	63	-	-
	Pvu11g0048	1167	PANTHER	SERINE/THREONINE-PROTEIN KINASE	28	1166	-	-
	Pvu11g0048	1167	MobiDBLite	consensus disorder prediction	411	433	-	-
	Pvu11g0048	1167	SMART	serkin_6	767	1053	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g0048	1167	PANTHER	SERINE/THREONINE PROTEIN KINASE IRE-RELATED	28	1166	-	-
	Pvu11g0048	1167	Pfam	Protein kinase domain	768	1053	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu11g0048	1167	SUPERFAMILY	Protein kinase-like (PK-like)	765	1083	IPR011009	-
	Pvu11g0048	1167	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	886	898	IPR008271	GO:0004672\|GO:0006468
	Pvu11g0048	1167	Gene3D	Phosphorylase Kinase; domain 1	766	1080	-	-
	Pvu11g0048	1167	Gene3D	Transferase(Phosphotransferase) domain 1	851	1071	-	-
	Pvu11g0048	1167	ProSiteProfiles	AGC-kinase C-terminal domain profile.	1054	1154	IPR000961	GO:0004674\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0048	Pvu-Chr11	353619	364518	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu11g0048	33	1167	AGC Kinase Gene Family	AT5G62310	62.457	0.0	1414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_MAST	Pvu11g0048		Pkinase	6.3e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0048	-		-	gmx:100806311	1954.1