Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0041 ATGGTGGTCAACGAGAGACCTTCCAAGAGGATGAAGAGGAGGGTCACGGCTGATCTCTACGATTTCCTCACTTTTCCGGCCACCGCCGACTCCCCCTCCGGCCAACCCTTCCGGACCTGTGTCCAACGCTTCCTCTCAGACCACGCGCGCATCACCTTTCCTCCCTCCCTTTTTCCGTCCCTTATGACGTGGCAGATCTTGTTCCGTGTCGGAGACCTCGTCGACGGACCCGATCTCTCGCCGGCGGTCGTTACTCTTGACATTGTCGAGGAGGATGTTACCCGTTCTCGCACTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGTAATGCGGTCGAACCATATCAAAGACCTTGTTCAAGATGTGGGAACCTGCTCCAATTATCTGAAACAAGGTGTAAATCGTGTAACTTTGCCATCACTGTGGATGACCTTGAGGACTGGGTGTATCTTCAGATTGAAGATAACACGCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCACCTGCTTACACTTAGTGGAAGAGAAGGTGGCTCGAAGCTTCTATCTGGATTTGATATTATGGATTTCTGGGATAGGCTGTGTACATCAATTTCTGTGAGGAAGGTTAGCGTGATGGACTTGTCCAAGAAATTTGGGCTGGAATACCGTTTGCTTCATGCAATCACCAAAGGACATTCCTGGTATGGCAATTGGGCTTATGAGTTTGGAACTGGCAGCTATGCTCTTACCCAAGATGCGTACAAAAACGCTGTGAATACACTGTCGAATATGCCCTTGTCGTCATTTTCGTTCCACGGTCGGGGACCACGAAGCCGCTTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACAGAACTTCTGAACATTCAAGATCTGTTCTCCTTTTTGTTGGTATTGATTCATGAATGTCGTAAGCCAATAGCCACGACAAGTTTTAAGCAGACCAGTAATCTGTTGTGTACGTGGACGGGAAATGATGTTGAAGAGGTGCAACATGCTCTTGTCAAGGTGTTGCTTGCATCGGGGGCGTGTACTGAGTCCAAATGGGTGACAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTTGACTACTGTCTTAAGCACTTGCCTGGGAAATTAGCTGCCAATGGGATGGTGGTTTGTTCACGATGTAATCCAATTTCCAGTGCAATCGAGTTCAGGTTGGGACCAAGGAGTAATGGATTAAGTACAGATTTAAGCTATCCTACAGAAGGGCAACTGATCTCTGACTTGAAATTTTTATTTGATTCGATAATACATCCTGAGAAAATGATGTCCTACAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAATTTATGAAGGATTACAAGCCATATGAAATGGCCATAGAACTGCCTTCTGTGATTAGGTTGTGGTGCCATGTGGAGCTTTCTGATCAGCCTAAGGAAGATCCATGCCCACCGCCAGAGCTTATTGTGTTGCCTTTGAATGCCACCGTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTGGGATATGGGTCAATCAGTGATTCGCTCACCGTAAAGTTATTGCTCGGAACAAGTGGATCAGTCCGAATTCAAGGTAAATGCCCAGCCAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGCGTGGAAGGTTGATTGCACCTGTGGGGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACATGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTATGCATGAGATGTGTCAGCTTGTACCGTGAGGAAACTAAAAATTCGCCAGCATCTGGTGAGGAACCTAACGCGACCTGTAAATTCAACTCATCTTGCAGAGATGAGGCAGTAGGAAGGGAATGTCCAACAGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2124 0.4694 MVVNERPSKRMKRRVTADLYDFLTFPATADSPSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPAVVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAVEPYQRPCSRCGNLLQLSETRCKSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGFDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSNMPLSSFSFHGRGPRSRLECVISLYQSLAETELLNIQDLFSFLLVLIHECRKPIATTSFKQTSNLLCTWTGNDVEEVQHALVKVLLASGACTESKWVTRRALKGAVCRGVSSPELLDYCLKHLPGKLAANGMVVCSRCNPISSAIEFRLGPRSNGLSTDLSYPTEGQLISDLKFLFDSIIHPEKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIELPSVIRLWCHVELSDQPKEDPCPPPELIVLPLNATVAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKLLLGTSGSVRIQGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVSLYREETKNSPASGEEPNATCKFNSSCRDEAVGRECPTVSCNITVNFGVR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0041 707 SUPERFAMILY FYVE/PHD zinc finger 601 657 IPR011011 -
Pvu11g0041 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Pvu11g0041 707 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 680 - -
Pvu11g0041 707 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Pvu11g0041 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Pvu11g0041 707 CDD PHD_MMD1_like 611 656 - -
Pvu11g0041 707 SMART PHD_3 611 657 IPR001965 -
Pvu11g0041 707 Pfam PHD-finger 612 657 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0041 Pvu-Chr11 301032 304323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0041 80 656 PHD Transcription Factor Family AT5G22260 28.431 3.40e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu11g0041 PHD 2.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0041 - - gmx:100780558 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0041 11 301032 304323 Pvu11g0041 11 301032 304323 ECH