Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0040 ATGGGTTCCTCCAATGGTGGTGTGCCGCCGGGATTCAGGTTTCACCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTCCAGAAGTTTGACATGGATGTTATCAGAGAGGTCGATTTGAACAAGATGGAACCGTGGGACTTGCAAGAAAGATGTAGAATTGGATCAACTCCGCAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCGACGAATGCAGGGTTTTGGAAAGCAACGGGAAGAGACAAATGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACTGATTGGATCATGCATGAGTACCGTCTAGAAGATGCCAATGACCCTCAAGGAACCTCCAATGAAGATGGGTGGGTGGTATGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAATGAAGGTGGCATTACACATAATCCAGATCAACAAATGAACAATTCCTCAAGCTCTAATGGACGCTCCTTCATGCATAGAGAAAACCATTACCTGCTACACCAACAGCAGAATCCCAGGGAGCTTGATAAGCCTGAGCTCGGTCTCCATTACCCACACTTGCAAAATCCCCAATACTCACTGTTTCAATCCCAAACTCTTGTTCAAACCCAAAAACCTATGGTTTATGACTACTCATATGCTTCGTCTCTACCTTCAGACACTCCAATAATGGCAAAGCAACTTATGACAAACCCTAGGGAGTGCGAGAGCGGCAGCGAGGGACTGAGGTATCAAGTTTCGGAGTCTGGAATTGAAGTTGGATCGTGTGAGCCAAACCAAGAAATGGGTGGCGGAAGAGGCGAAGGGATAAACGAATGGGGTGTTCTTGATCGGTTAGTTACTTCCCATCTTGGACACGAAGAGTCAAACAAAGGAGTGAGGTTTGAGGAGGCGAATCCTCACTCTGTGCATCAGATCAACCAACTTTCGTTACGGGGAGAGATGGATTTCTGGGCCTATGGGCCCAAACAATGA 1074 0.4534 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPQGTSNEDGWVVCRVFKKKNLFKIGNEGGITHNPDQQMNNSSSSNGRSFMHRENHYLLHQQQNPRELDKPELGLHYPHLQNPQYSLFQSQTLVQTQKPMVYDYSYASSLPSDTPIMAKQLMTNPRECESGSEGLRYQVSESGIEVGSCEPNQEMGGGRGEGINEWGVLDRLVTSHLGHEESNKGVRFEEANPHSVHQINQLSLRGEMDFWAYGPKQ* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0040 357 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Pvu11g0040 357 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Pvu11g0040 357 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Pvu11g0040 357 MobiDBLite consensus disorder prediction 168 188 - -
Pvu11g0040 357 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Pvu11g0040 357 MobiDBLite consensus disorder prediction 171 188 - -
Pvu11g0040 357 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 239 - -
Pvu11g0040 357 PANTHER PROTEIN BEARSKIN2-LIKE 5 239 IPR033519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0040 Pvu-Chr11 288840 291061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0040 1 350 NAC Transcription Factor Family AT1G33280 55.462 2.45e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu11g0040 NAM 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0040 - - gmx:100804181 670.618