Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0035 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCCCCTGTAATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGAGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTGAGAGTAATGGGTTCTTTTCAGACAGGATTTGGAGGAGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCACCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCTCAGTACCCAGTTTATGGAAGCGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTATCCGTATCTGCAGTACGGAGGAGAAGGGAGTGGCGGCGGCGGCACAAGCGGTGGCTATAGTTCCGGGCAGGGTTACGGCGTGAACTATGCCCCTCACCTGTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGTCCCTTCAAGCTCCAATTCCTCATCGCTAG 822 0.5073 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNLRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTMSLQAPIPHR* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0035 273 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Pvu11g0035 273 Gene3D - 7 113 IPR012677 -
Pvu11g0035 273 PANTHER OS01G0876800 PROTEIN 1 268 - -
Pvu11g0035 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Pvu11g0035 273 PANTHER BOULE-RELATED 1 268 IPR037366 GO:0003729
Pvu11g0035 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Pvu11g0035 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pvu11g0035 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0035 Pvu-Chr11 256806 262081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0035 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.76e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0035 - - adu:107477578 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0035 11 256806 262081 Pvu11g0035 11 256806 262081 ECH