Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0030 ATGGCCCAGCAGTCATCTAGGCTCCAGCGTTTGCTTACTCTCCTGGACACTGGGTCAACCCAAGCTACAAGGTTGACCGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTCAAGAAGGTTTCTCAATACCTCCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGATCAATCGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTCTGTTATATCACAAATGAGTGAGAATGGGATATCTTGTAGCATTGAGGATCTTTGTGCATGGCCGTATTTACAATCAAAACTTACAGGAAGCGCATTTAGAAGCTTTGATATGAGCAAGGTGCTTGAATTTGGTGCCTTATTAGCATCAGGGGGTCAGGAATATGATATTGGAAATGATAATATAAAGAACCCGAAGGAGCGATTGGTTCGACAGAAGCAAAGTCTTCGCCGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTCATAAGAGACGAAGATCTTATGGTGTCGAAATCAGACTCACATCTGAATGGGATTGATGGTAGAGTTTTTACTTCTTGTTCTGCTCATAACATCCAGAAAATGGTGGTAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGCGCAAGAGAATTGAATCTTTTAAAGCGTAAAGCGAAAATAAACTCAAAGGACCAAACAAAAACCTGGTGTGAAGATGGAGGTACAGAGGCATCAGGTGCTCAAAGTTTGACTTCAAAAGGCACATGTCCTGATTCACTGAATTACAGTAAGGTATTCATGGATGTTAATCACGACGATGATGGCTTCGAGCATGATGGGGATGGGCAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATAGATATGTTTGATTCTGTTTGGGAGATACGACATGGTAGCGTGATGGCACTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCTGGAGTATTTAAACCTGACTCACACATGGGTGGGACCCTGTTTATTGAATTAGAAGACAAAAGTATGCCAAGCACATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCACGTTTCAGCTGATGAGTTTGATTCAAACCTGAAGAGGCCAAAACTTGAAGATGTATCATCATCAACCTTTATGGATAGTGTGATGACTTGCAACAATGAAGGTGATATTAAAATCAGCATTACTTCTGAAACCCATGGATGCAATTTAACATTGGATTACGGGAATGGGCAATTTAATGGTAATTCCAATGACATGGATCTGGAGTCTCAACCTGATGGCTCACATGATGCATGCAAAGAGTCTGCTAGTATAGCAGAACAGAAGGTTCATTTTGATGACAATAAGATGCCCCCTGGAAATCTTATTGCGCTGAGAAATCTTCCTCAGAACTGCGAGCTGATGAACTCTGTTAAAGTGGCTAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGATTGTGTGATACGCTTTTTGTGCGTGTTGTCACTAGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCTTTAGGTGCTGCATTTAAGTATATGCATCCTGCATTAGTAAATGAAACATTGAACATATTGTTGGGAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATAAAATATTTGGTTGCTGTTCGGCAGGAGATGCTTTCTGATTTGCTTGGACGAGTTCTTCCTGCTTGTAGATCTGGGTTGGAGGACCCAGATGATGATGTCCGGGCAGTTGCTGCTGATGCTTTAATACCTGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCCATTGTGATGCTTTTATGGGATATATTGCTTGACTTGGATGATTTAAGTCCGTCCACCAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAAATGGCGCCAAATATGTATGAAGTTTTTAGATTGGGAGACAAAGAAATGGAAAATGGAGGAGGTGGTTGTGGTGATGACGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACAACGTTTGTGGCCCTTTATGAGGCACAGTATCACATCTGTTCGTTATTCTGCAATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTGGTGCTTCATTCTGGCCCTCTTCTATATTTGGAGATACCCTTAGAATCGTATTCCAGAATCTGCTATTAGAAACAAATGAGGATATTTTGCATTGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTATGGAGGACTTGGAGATGGCTGCAAGTTCTTATGGGGCTTCTTGGATAGAACTTGCATCTACCCCATTTGGATCAGCATTAGATGCATCAAAGATGTACTGGCCTGTTGCCTTTCCACGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGTGGTGTGGAATTTAGTCTTGATTCTATTAAAGGAACTATTCCACACGATAGAAATGGAGATGTTCCCATGAATTCTGTTAAGATGGTCGTTGGTGCTGATGTGGACACTTCTGTTACTCATACCCGAGTAGTTACAGCAACTGCTTTGGGATATTTTGCTTCTAAGCTGCCAGCGGGTTCTTTAAAATATGTGATTGATCCACTGTGGAGCTCCCTAACCTCTTTATCTGGTGTCCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGATCAGAAATTTGTCCAAAAACCTTGATGGTATCCCTGGTGCCCTCAAAGGTTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCGACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCCAGAACTTATGCAAAGATGCGCAGTGAGGCTGGTCAATTACTAAATGTAGTCAAGTCTTCTGGTATGTTTGATGAGTTATTGACAGCAACACAAATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCTTCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAATGAATCCTTGGCAAAGAACATCATGGATGATATTGAGTCCTCCAAACAGAGACTCTTGACAACTTCTGGATATTTAAAATGTGTTCAGAGCAACTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACACCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTCCAAATGAAGTCTGCTGAGGCCCTTGCTGAGCTAATGTATCACTGTGTTGCACGTAAACCTTGCCCCAATGATAAATTAATAAAAAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATTGAAAGTATCGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGAAGATCGTTCAAAGGTGGAGGGATTTTTAAGTAGACGAGGATCTGAGCTATCATTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGACAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTTCTTAAACCTGTACCCATCATCGAGGAAAAGCAAGCTAATGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCTGTGTTAATCAAGGAGTTGAAGCCAAAACTGTTGACACTTCTTCCATGCATCTTCAAATGTGTTCAGCATTCTCATGTTGCTGTTAGATTAGCTGCTTCGCGCTGCATCACTTCCCTGGCACAGTCAATGACTGTCAAAGTTATGGGAGCTGTGATTGAAAAGGCTATCCCTATGTTGGAAGATTCGTCATCTGTTTATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTAGTTCAGGGGCTGGGTGTAGAGTTGGTACCTTATGCTCCTCTGTTGGTGGTTCCTCTTCTAAGGTGTATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACTCATAGTTTTGCTGCTCTTGTTCCTTTACTTCCTTTGGCTCGGGGCCTTCCTCAACCTATAGGACTAGGGGAAGGTGTATCCAGAAATGCAGAAGACTTGCAATTTTTAGAGCAACTGCTTGACAACTCTCATATTGAAGATTACAACTTGTGTACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGGACTACAATTGGGAATGAGGATCTTCCGGCATCTTTAATTATCTGCCCATCAACTTTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCTGTTATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGAAAGAGTGCTTCTTCGAGATCATTTTTGTAAGCATAATGTCATTATAACATCATATGACGTTGTGCGTAAAGATGTTGATTTTCTGGGACAGCTGCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATAAAAAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAGCACCGCTTGATATTGAGTGGGACACCTATACAGAATAATATAATGGACTTGTGGTCCCTCTTTGATTTTCTGATGCCAGGCTTTCTTGGAACCGACAGACAGTTCCAAGCAGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGTACTTGCTATGGAGGCATTGCATAAGCAGGTGATGCCTTTCCTCCTTCGTAGAACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAAATAATCCAAGACAGATACTGTGATTTGAGCCCTGTACAATATAAACTTTACGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCCATTGTAACAACAACGAATGAGTCTGCTGCGCCAGAAGGAAGTGGCACTTCTACTAAAGCGTCTTCACATGTTTTCCAGGCACTCCAATATTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCACTGGTGAGAAGATTCCAGATTCACTCTCTTCCATCCTCTTGGAACTGTTTCCTGCTGGCTCTGATGTTGTTTCAGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAATGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTACAGTTAACGTTGGGCAGCATAGGGTCTTGATATTCGCTCAGCATAAGGCTTTCCTGGATATAATTGAAAGAGACTTGTTTCAGACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGCATCAGAGAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTCTTTGTGGAGCACGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGACTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAAAGATTCAAAGTCTCCGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTACTTGACTTATTTGCATCAGCAGAAACCTCCAAAAAGGGTGTTAATGCTGTGAAGAGTTCGGAGAACAATTCTGATGGAGACGCCAAATTAGTAGGCAGTGGGAAGAGATTGAAATCGATACTTGGCGGGTTGGAGGAGCTATGGGACCAATCACAGTATACAGAGGAGTACAATCTGAGTCAATTTTTAGCGAGGCTTAATGGCTAA 6141 0.417 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVISQMSENGISCSIEDLCAWPYLQSKLTGSAFRSFDMSKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQSLRRRLGLDVCEQFMDISDVIRDEDLMVSKSDSHLNGIDGRVFTSCSAHNIQKMVVNMVPSVKSKWPSARELNLLKRKAKINSKDQTKTWCEDGGTEASGAQSLTSKGTCPDSLNYSKVFMDVNHDDDGFEHDGDGQWPFHTFVEQLIIDMFDSVWEIRHGSVMALREILAHQGASAGVFKPDSHMGGTLFIELEDKSMPSTLKREREIDLNMHVSADEFDSNLKRPKLEDVSSSTFMDSVMTCNNEGDIKISITSETHGCNLTLDYGNGQFNGNSNDMDLESQPDGSHDACKESASIAEQKVHFDDNKMPPGNLIALRNLPQNCELMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLGMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPACRSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMAPNMYEVFRLGDKEMENGGGGCGDDDGEENPYVLSTLAQRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSGASFWPSSIFGDTLRIVFQNLLLETNEDILHCSERVWSLLVQCSMEDLEMAASSYGASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVEFSLDSIKGTIPHDRNGDVPMNSVKMVVGADVDTSVTHTRVVTATALGYFASKLPAGSLKYVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKIRNLSKNLDGIPGALKGWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNVVKSSGMFDELLTATQIELDRLSVDDAIGFASKIPALCNDSSANESLAKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEALAELMYHCVARKPCPNDKLIKNICSLTCMDPSETPQAKSLCTIESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPVPIIEEKQANVSIESVSDPQTLINNIQVVRSVAPVLIKELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSLAQSMTVKVMGAVIEKAIPMLEDSSSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYNLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTTIGNEDLPASLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQERVLLRDHFCKHNVIITSYDVVRKDVDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTDRQFQAAYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQYKLYEQFSGSRVKQEMSSIVTTTNESAAPEGSGTSTKASSHVFQALQYLLKLCSHPLLVTGEKIPDSLSSILLELFPAGSDVVSELHKLHHSPKLVALHEILEECGIGVDNSGSEGTVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVASEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGVNAVKSSENNSDGDAKLVGSGKRLKSILGGLEELWDQSQYTEEYNLSQFLARLNG* 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0030 2046 Gene3D - 866 1407 IPR011989 -
Pvu11g0030 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1461 1631 IPR014001 -
Pvu11g0030 2046 Gene3D - 501 675 IPR011989 -
Pvu11g0030 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1682 1984 IPR027417 -
Pvu11g0030 2046 CDD SF2_C_SNF 1797 1939 - -
Pvu11g0030 2046 Gene3D - 4 93 IPR011989 -
Pvu11g0030 2046 Pfam Domain of unknown function (DUF3535) 783 1237 IPR022707 -
Pvu11g0030 2046 SMART ultradead3 1445 1639 IPR014001 -
Pvu11g0030 2046 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1978 IPR044972 GO:0003677|GO:0016887|GO:0017025
Pvu11g0030 2046 SUPERFAMILY ARM repeat 6 1488 IPR016024 -
Pvu11g0030 2046 Gene3D - 1421 1680 IPR038718 -
Pvu11g0030 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1434 1681 IPR027417 -
Pvu11g0030 2046 Pfam Helicase conserved C-terminal domain 1826 1928 IPR001650 -
Pvu11g0030 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1818 1974 IPR001650 -
Pvu11g0030 2046 SMART helicmild6 1842 1928 IPR001650 -
Pvu11g0030 2046 Pfam SNF2-related domain 1467 1764 IPR000330 GO:0005524|GO:0140658
Pvu11g0030 2046 Gene3D - 1691 2009 IPR027417 -
Pvu11g0030 2046 CDD DEXHc_Mot1 1449 1681 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0030 Pvu-Chr11 213343 232401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0030 1444 1983 RAD5 or RAD16-like Gene Family AT1G02670 26.034 4.51e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu11g0030 DUF3535 1.1e-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0030 K15192 - gmx:100777977 3631.26