Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0019 ATGCAACCCAATTCCGCCGCCAGACTTCCCAGCTTCCGCTCAACTCCGGCCGCCTGGTTAGAATCAGTCCTTTTGAAGGAAGAGGAAGAGGAGGAGGAAGAGCAAGAAGAAAGCGAAGAAGCTGAAAAAGAGACCTTGACCTTTACCCAGTTGCTTTCTACCATCGCAGCTCCCTCTCCTTCCCGACGCCAACGCCAACGCCAAAACTATGAAATACAGGATTACCCTCCCACCTCCATGCCCATCCCCAATCCAATCGCACCCGAGGAACGTGATGCTTCTCCCCCCCACATCAAAATGGACATGTTCATGTTTGAGGACTCGGCGGCACCCTGTAGAGTTCGCGCCAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTCCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTACATGAGGCGGTAGCTTATGTCAAGTTTCTTCAAAAGCAAATTGAGGAACTGACAGAGCACCAACGGAGGTGTAGATGTATGGTTCAAGAGTAA 573 0.5079 MQPNSAARLPSFRSTPAAWLESVLLKEEEEEEEEQEESEEAEKETLTFTQLLSTIAAPSPSRRQRQRQNYEIQDYPPTSMPIPNPIAPEERDASPPHIKMDMFMFEDSAAPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLHEAVAYVKFLQKQIEELTEHQRRCRCMVQE* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0019 190 MobiDBLite consensus disorder prediction 26 41 - -
Pvu11g0019 190 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 98 184 - -
Pvu11g0019 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 188 IPR036638 GO:0046983
Pvu11g0019 190 SMART finulus 126 176 IPR011598 GO:0046983
Pvu11g0019 190 Coils Coil 170 190 - -
Pvu11g0019 190 Coils Coil 20 47 - -
Pvu11g0019 190 CDD bHLH_AtbHLH_like 125 177 IPR045239 -
Pvu11g0019 190 MobiDBLite consensus disorder prediction 52 86 - -
Pvu11g0019 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 170 IPR011598 GO:0046983
Pvu11g0019 190 Pfam Helix-loop-helix DNA-binding domain 125 171 IPR011598 GO:0046983
Pvu11g0019 190 MobiDBLite consensus disorder prediction 52 75 - -
Pvu11g0019 190 MobiDBLite consensus disorder prediction 26 45 - -
Pvu11g0019 190 Gene3D - 121 190 IPR036638 GO:0046983
Pvu11g0019 190 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0019 Pvu-Chr11 152663 156357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0019 104 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 81.609 6.62e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu11g0019 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0019 - - vun:114169578 239.965