Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0015 ATGAGTATGGAGCTTCCCTGTGACAGTGAGGGCGTCTGCATGCAGTGCAAGGCCGTGCCGGGAGAGGAAGAGAGGCTGCTATGCATCACCTGCAACACTCCATGGCACCTCCCATGCCTCTCCACTCCTCCCTCCACTCTCGCAGCCACCACTCACTGGTCCTGTCCCGATTGCTCCAATCTCGATCCTCATCCACCTCTTCCCGCTCCCCAACGCAATGACCTCGTCGCCGGAATGTTAACCATCGAAAACGACGATTCTCTTACGCAAACTCAGAAAGCCAGAAAACGCCAACAACTCATTGCTGGAAAAGCTCCGGCACAAGACGACGAAGACGAGGAAGAAGAAACAGAAGAAAATCAGAGTAAACCACCACCATCTGTTTGGGAAATGCTCTCCAGAACCATCCAATGCTCCATCTGCCTCAACTTACCGGAGAGGCCCGTCACGACTCCTTGTGGTCACAGTTTCTGTCTGAAGTGTTTTGAGAGATGGGTTCGGCAAGGGAAGATGAACTGTGCCCAGTGCCGCCAGGCTATTCCGGCCAAGTTTGCAAGCCAGCCCCGTATCAATTCTGCATTGGTGTTTGCAATTCGCATGGCCAGGACCAATTCTAACCCTAATGCTAGTGCTGGAGGAGATAGGACTCTCAACCATTACCGGCACAACCAAGACAGACCCGATGAACCGTTTACTACGGAGCGTGCCCAGAGGGCTGGCCGTGCCAATGCGGCCAGCGGAAAAATATTTGTGACGGTGCCTACGGATCATTTTGGTCCAATCACTGCAGAGCATGACCCTGTGAGGAATCAGGGTCTGCTGGTGGGTGAGAGTTGGAGAGACAGGCTGGAATGCAGGCAATGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGTCAATCAGATCGAGGTGCACAATCTGTTGTTCTTTCTGGTGGTTACGTTGATGATGAAGATCATGGAGAGTGGTTTCTCTACACTGGAAGCGGCGGTAAGGATCTTAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGACCAGCAGTTTGAGAAGTACAACCTTGCACTTCAACTTAGCTGTCTCAAAGGTTATCCTGTTCGAGTTGTCAGATCTCACAAAGAAAAACGATCTTCATATGCCCCGGAGACTGGAGTGCGCTACGATGGAATTTATAGAATTGAAAAGTGTTGGCAGATAGCAGGAGTGCAGGGTTTCAAAGTTTGCCGGTATCTATTCGTTAGGTGTGACAATGAACCCGCCCCCTGGACAAGTGATGAGCGTGGAGATAGGCCCAGACCCTTGCCGGTCGTCCGTGAACTGAAAAAGGCCACCGTCACATTTGAAAGAACTGAATCTCCATCTTGGGATTTTGATGAAGAAGATTCTCATTGGAAGTGGATGAAATCACCGCCTCCCAGCAAACGAAAGGTGCAAAGTGCGGAACCCGTAGAGGGAGTAAGAGCATGGTCAAATAGTGAAAAAAGGAAGTTCGAACTTAAGAAAATCCAGGAAAAATTGCACATGGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTAAATTTGCTGGTCAGTCTTTTGTGAAGGAGAGAGGTGGGGGCGGGAGAACGCTTCGGTCCCAAAAAAATGTGATGCACTGTCCTTCTTGCCCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATATAGATTTAAAGGGTGCGATTGAGTCACTCAAAGCCAATGTTGAAGAGATTGAAAAATCTTTGGAATCAGATGAGGATGCAGCTGCAGATGAATTACATGATGATACTGGTTCTGAGAACCAAAATTCTGCAGAAGAGTTGAACAATCCACCAGAAGGATCTGATGTTGGTGAGTTCAAAGACACCAATAATGAGGGACAAGATCCAGAATTAACGTGCAATGAAAAGAGAAAGAAAGGTGATGATGAAACACAATCGTCTGATGATAATATGGATAAAAAAGATAAAAAAAACAAAATGACTGAGCAAGCAGTGGATGATAAAAATGTTTCTTCATCATCAAGTTCTCTCAATCTTCCATGA 2115 0.4771 MSMELPCDSEGVCMQCKAVPGEEERLLCITCNTPWHLPCLSTPPSTLAATTHWSCPDCSNLDPHPPLPAPQRNDLVAGMLTIENDDSLTQTQKARKRQQLIAGKAPAQDDEDEEEETEENQSKPPPSVWEMLSRTIQCSICLNLPERPVTTPCGHSFCLKCFERWVRQGKMNCAQCRQAIPAKFASQPRINSALVFAIRMARTNSNPNASAGGDRTLNHYRHNQDRPDEPFTTERAQRAGRANAASGKIFVTVPTDHFGPITAEHDPVRNQGLLVGESWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDEDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQQFEKYNLALQLSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGVQGFKVCRYLFVRCDNEPAPWTSDERGDRPRPLPVVRELKKATVTFERTESPSWDFDEEDSHWKWMKSPPPSKRKVQSAEPVEGVRAWSNSEKRKFELKKIQEKLHMGFSCMICKEVMVSPVTTPCAHNFCKSCLEGKFAGQSFVKERGGGGRTLRSQKNVMHCPSCPIDISDYLQNIQVDIDLKGAIESLKANVEEIEKSLESDEDAAADELHDDTGSENQNSAEELNNPPEGSDVGEFKDTNNEGQDPELTCNEKRKKGDDETQSSDDNMDKKDKKNKMTEQAVDDKNVSSSSSSLNLP* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0015 704 Pfam Zinc finger, C3HC4 type (RING finger) 138 176 IPR018957 GO:0046872
Pvu11g0015 704 MobiDBLite consensus disorder prediction 689 704 - -
Pvu11g0015 704 SMART PHD_3 12 59 IPR001965 -
Pvu11g0015 704 SUPERFAMILY RING/U-box 137 188 - -
Pvu11g0015 704 Pfam RING-type zinc-finger 514 554 IPR027370 -
Pvu11g0015 704 ProSiteProfiles Zinc finger RING-type profile. 138 177 IPR001841 -
Pvu11g0015 704 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Pvu11g0015 704 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Pvu11g0015 704 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
Pvu11g0015 704 ProSitePatterns Zinc finger PHD-type signature. 13 58 IPR019786 -
Pvu11g0015 704 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 3 696 - -
Pvu11g0015 704 MobiDBLite consensus disorder prediction 642 688 - -
Pvu11g0015 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 617 IPR013083 -
Pvu11g0015 704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 696 IPR045134 -
Pvu11g0015 704 Coils Coil 591 611 - -
Pvu11g0015 704 MobiDBLite consensus disorder prediction 206 243 - -
Pvu11g0015 704 SUPERFAMILY PUA domain-like 242 438 IPR015947 -
Pvu11g0015 704 CDD RING-HC 138 176 - -
Pvu11g0015 704 SUPERFAMILY RING/U-box 511 594 - -
Pvu11g0015 704 SMART G9a_1 263 420 IPR003105 -
Pvu11g0015 704 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Pvu11g0015 704 SMART ring_2 13 58 IPR001841 -
Pvu11g0015 704 SMART ring_2 514 570 IPR001841 -
Pvu11g0015 704 SMART ring_2 138 176 IPR001841 -
Pvu11g0015 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 60 IPR013083 -
Pvu11g0015 704 MobiDBLite consensus disorder prediction 88 128 - -
Pvu11g0015 704 Pfam SAD/SRA domain 271 419 IPR003105 -
Pvu11g0015 704 Gene3D - 239 437 IPR036987 -
Pvu11g0015 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 203 IPR013083 -
Pvu11g0015 704 MobiDBLite consensus disorder prediction 218 235 - -
Pvu11g0015 704 MobiDBLite consensus disorder prediction 602 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0015 Pvu-Chr11 123311 127162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0015 1 605 C2H2 Transcription Factor Family AT5G39550 56.402 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0015 K10638 - gmx:100801535 1086.63