Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0008 ATGGCTTTCTGGGGAGTGGAAGTGAAACCAGGAAAGCCTTTTACTCATAAATATGAGGACTCCAAAGGACGCCTCCATATTTCAATGGCCACTCTGGGGTTGGGCACTGCCACAACAAAAAGCACACTGCAGTGCAATGTCGGAAACAGGAGTCCTGTATACCTTTGCTCTCTCTACCCTGGAAACTCAGAGTCATTGCAATTAAACTTAGAGCTCGAAGAAGTTGATCAAGATATTGCTGATACAGAAACAGAGAGATCTGATTACAGTGACGAAGAGGATTATGAGGATAGTTTTATTGATGATGACATTGTTCCAGAGGCTTTCTCACCATCTCCTATTTCCAAAGAAGGCAATTGCCCCAATTCAAAACCTCAACCATCTTCTCATGACACCAGACCAAAAATTAGGAAAGGCAGTCTTCGACGGCTTAGGAAGAGGTACCAAGTTGAGTCGGATGATGATGGCTGTTGTGGAGAAAAGATAATTGGCAATGACAGAATGCATGCCCAAATCCAGGAAACTGACAATGAAGATAGCCTACCTATTTCATCTCTTTACAAGAATAAAGCCTCCGGAAGGGTCGTGGACGAGGAAATGGATGTTAGTGTTGTCATAGGAGCAGGTGCTGCCAGCAACAAGAATGGAGAAGATGGTGGAAATAGTACTTTTGAAACAAATCTAGAGGCTGGGCATGTCCTTTTAGATAGTCAGACACATAGGGAAGCTGTGCCATCAAAGCACTTGGTAGATCCTTGCACATCTCTGGATGTTGGGGATATTAAAAATTCAAAAAAGAAAAAGAAGAGAAAGGAAAAAGAGACAAAGAGCTCCTGTAATGGCCATTCTATCAAACTAGATAATGTTATAGATGAGCTAAAAAAGGAAGAGATGACCCAGGATATTGTGGCAGGAGGTAAACAACAGCAGCATGCTGATGATAAGGATGTTAAAATTTCAGGCAATGTTGCATTGCCTTCTGCTGAGACGGATCCTAAAAAGAACAGGAAAAAGGGGAAAAAGAAAGAACAGGTAAACAAAAGTGACAATGGATATAATGAAAATGCCATCCAGGAGGACATGACCAACAGAGATGCAGCAGGGTCACAAAATGTGATTTATAATTTTTCTGAAGAAAAACAACAGCATCAGAAGCTAACTAATGAGAAGATGGTAGACAATGGTGCTTTTGACTTACCTGATGGAAATCAATCTGAGAATAGAAAAGTTAAGAAAAGGAAGAAAATGAGCAAAAGTCAGGGCAACGGGGAAGTTGTAAATTCTAATATTGCTGTATATGTTGAGCGAAGTGGTGAGACTGAGATGATGGAGGAGGATAGAAATAAGGGGGTAGATGCAAAACCTTCCCATGTTAGAACTTTGACAAATGGACTAGTTATTCAGGAACAAGAGAAGGGGATAAAAGATGGCAAAATCGCTGCTTCAGGAAAAAAGATTAGCATTTATTACACTGGCAAGTTGAAGGAAAATGGAACTGTCTTTGAGTCAAATGCCGGCCAAGCTCCTTTCAAATTTCGCCTTGGTAAAGGCGAGGTTATCGAGGGTTGGGATGTTGGCCTTGAAGGCATGCATGTTGGAGAAAAGAGGAGACTCGTTATCCCACCATCACTGACGTCTGAGAGTGAAGGACACTCTGCCAAAATACCACCAAATTCATGGTTGGTTTATGACATTGAACTAGTTAAAGTTCATTGA 1716 0.4132 MAFWGVEVKPGKPFTHKYEDSKGRLHISMATLGLGTATTKSTLQCNVGNRSPVYLCSLYPGNSESLQLNLELEEVDQDIADTETERSDYSDEEDYEDSFIDDDIVPEAFSPSPISKEGNCPNSKPQPSSHDTRPKIRKGSLRRLRKRYQVESDDDGCCGEKIIGNDRMHAQIQETDNEDSLPISSLYKNKASGRVVDEEMDVSVVIGAGAASNKNGEDGGNSTFETNLEAGHVLLDSQTHREAVPSKHLVDPCTSLDVGDIKNSKKKKKRKEKETKSSCNGHSIKLDNVIDELKKEEMTQDIVAGGKQQQHADDKDVKISGNVALPSAETDPKKNRKKGKKKEQVNKSDNGYNENAIQEDMTNRDAAGSQNVIYNFSEEKQQHQKLTNEKMVDNGAFDLPDGNQSENRKVKKRKKMSKSQGNGEVVNSNIAVYVERSGETEMMEEDRNKGVDAKPSHVRTLTNGLVIQEQEKGIKDGKIAASGKKISIYYTGKLKENGTVFESNAGQAPFKFRLGKGEVIEGWDVGLEGMHVGEKRRLVIPPSLTSESEGHSAKIPPNSWLVYDIELVKVH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0008 571 MobiDBLite consensus disorder prediction 80 140 - -
Pvu11g0008 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 479 568 IPR001179 GO:0003755
Pvu11g0008 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 483 571 IPR001179 GO:0003755
Pvu11g0008 571 MobiDBLite consensus disorder prediction 394 423 - -
Pvu11g0008 571 PANTHER PEPTIDYLPROLYL ISOMERASE 77 232 - -
Pvu11g0008 571 PANTHER PEPTIDYLPROLYL ISOMERASE 1 76 - -
Pvu11g0008 571 PANTHER PEPTIDYLPROLYL ISOMERASE 312 571 - -
Pvu11g0008 571 MobiDBLite consensus disorder prediction 301 356 - -
Pvu11g0008 571 SUPERFAMILY FKBP-like 419 570 - -
Pvu11g0008 571 MobiDBLite consensus disorder prediction 115 129 - -
Pvu11g0008 571 Pfam Nucleoplasmin-like domain 3 75 IPR041232 -
Pvu11g0008 571 Gene3D - 433 571 IPR046357 GO:0003755
Pvu11g0008 571 MobiDBLite consensus disorder prediction 255 283 - -
Pvu11g0008 571 Gene3D Nucleoplasmin core domain 1 86 - -
Pvu11g0008 571 MobiDBLite consensus disorder prediction 330 348 - -
Pvu11g0008 571 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 77 232 - -
Pvu11g0008 571 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 1 76 - -
Pvu11g0008 571 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 312 571 - -
Pvu11g0008 571 MobiDBLite consensus disorder prediction 80 103 - -
Pvu11g0008 571 Coils Coil 65 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0008 Pvu-Chr11 48751 55397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0008 482 568 Calmodulin-binding Proteins AT5G48570 43.182 9.61e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0008 K14826 - gmx:100798135 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0008 11 48751 55397 Pvu11g0008 11 48751 55397 ECH