Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0005 ATGGCATCCAATAATCCTTTGGATATCATGGAGAATGAGGAATTTGATTGGGAAGCAGCTGCTAGAGAAATCGACGTTGTTTGTCAGATGACGAGTGACGCACAGGAAAAGGGAAAGGAAAAGGGAAAGCAGCAAACGACTCTCGATAGGTTCGTGTCTATTGCCAACGCCAAGAAGGAATCCTCAATACCTACACCAACACCGCAGTTGGAAGAAGATGACGAAAACCCTACCTTCGTCCACCACATTGATGCGGAGGCAGCTAAAACCTGGATATATCCGGTTAATGTTCCTCTCCGTGACTATCAATTTGCTATTACCCAGTCCGCACTCTTCTCAAACACATTGGTGGCCTTGCCAACGGGACTTGGCAAAACACTCATTGCTGCAGTCGTCATGTATAACTACTTCAGATGGTTTCCTCAAGGCAAAATAGTCTTTGCTGCTCCTTCTCGGCCACTCGTCACGCAGCAGATTGAAGCTTGCCACAATATTGTTGGAATACCTCAAGAATGGACAGTTGATATGACTGGTCATCTAAGTCCTCCCAAAAGGGCTCAACTTTGGAAAACTAAGCGAGTATTCTTTGTCACTCCTCAAGTATTGGAAAAGGATATTCATTCTGGTACATGTTTGGTGAAGTACTTGGTATGTTTGGTTATTGATGAAGCTCACAGAGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTGAGTTAATGGCTGTACCGGTACAGCTGAGAATATTAGCCTTAACTGCAACACCAGGATCAAAGCAACAGACAGTTCAGGCTGTCATTGATAATCTGCATGTCTCCAGACTTGAATATCGCGGCGAAACTGACCATGATGTTATCTCATATGTTCACAATAGGAAGATAGAATTGATACAGGTTGCGATGGGCCCAGAAGCTGTAGAAATAAATAACATGTTTATGGAAGTAATACGCCCTATAGTAGCGAGACTTACAAAAATTGGTGTCATTCAAAACAGAGATTACCGTACTTTGAGCCCTTGTCAATTACTTGAAATTAGGGAAAGTTTTCGTCAACGGCTTAGGCAAGATCTTTCTCATGTCAACTATGAAGATGTTGAAGGGTATTTTGGAGTTCTCATCACTCTTTATTACATCCATAAGTTACTTTCAAGCCATGGAATAAGGCCAGCACACGAGATGCTTGAGAGAAAATTAAAGCAAGGATATTTTGCAAAATTTATGAGTAAAAGTGAAGTTATTCTGAAAGCAAGGCAACTAATGCAGCAAACTTTGTTTCATGGAGCGTCGAGTCCAAAATTGTCCAAAATGCTAGAAGTATTGCTGGAGCATTTCAAAACCAATGATCCGCAAAACTCCAGGGTAATTATTTTCTCTAATTACAGAGAAAGTGTCAGGGATATAATGAATGCACTTGAAGATATTGGGGAATTAGTTAGAGCTACCGAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAAAAGGTTCAACAGGCTGTGCTGACGAAATTTCGGTCTGGCGCCTATAATGTCATTGTTGCAACATCAATTGGCGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAGTTGTAGTTTTTGCTTGTGAAGGGTCTGAGTTGAAGGGCTACTTGCGAAAAGAGGCAAAGAGCAAAACTATAAGTAGACACATGCGCAATGGGGGCATAAATAGCTTTTCCTTTCATCCTAGTCCAAGGATGATTCCTCATGTCTTCAAACCAGAAGTTCAATATGTTGAGCTGTCCATTGAGAAATTTATTCCTCGTCAAAAGAATGTGAAGGATGACAAGCTCCACATTTCTCCATCGAAGGGAAAACTCACTGTGGCTGAAATCAATTTACTTGAAACGTATTTTCAGCCTACTGGAGAAAACATCTGTAGAACGTCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAGGTGAAGCATTCATCTGGAACATTGATGCTTATAGACATGATGCAGCGTTTGCAAGGGCTAGCATCATTTCCAAAAGATGAAGAAACTTCTTCACTTCAGGAAGATCTGTGCTTGGGACATAGTAAGCCAGTCACCAGTACCAAACTTGATAAAGCTAATATGGGCAATGAATCATGCTCTAGGCATGCAATGAGAATGAGTGTAGTCTCAGTTAATTGTCTGGACCTGGATTCATGTCATGTGGGCACTCAAAGCAAAGACTTCGTTGATCCAACTTGGGAAGAAGAAACATGTGAGGGTGATGAGGCAATTCCTGAGACTCCAATTTTTAAGAGAAGTGTGTCAAATGAAGGATATAATGCTGGTGAAATGCTAAATCTTATGGAGCTCGAGACTTCTTCGTTGGTTGCAGATGCATGCATTAATGGCATGAAAGATGAAGAACTTAGTCCACGTTTAACGAATTTGATTAAAAGTGGTGTAGTTCCGGAGTCTCCCATTGATGAAAGAGGGAAATCAGGATACCATTCTGTCATACGTGACTATATTTTACCTGTCAGTGTCCACAAAGAACAGAATGTCAGTTCTTTAAGATCTAGGGAAACTCAAATGGTTGACAATGATAAGGGCACCGATAAGGATGTCTGTACTTACTCTGTCAATGAAACTCAAAGCCCCTTACTTGACCTGAAGAATTGTATCATTAGAAGAGGACGAGTCTTCCTTTCTCAAACTGAGGAAGGCCATATACATAACTCTGACCAAAGCCTCAGTGAAGAAGCACTTCCAGCAGATTGTGGTGAAATGTCTGAAAGCATTAAACCTGCACGCAGATTTAAAAGGTTGCGAAAAGCTGAAGATACTGAAAGCAATAGGGATCAGAAAAATAATTCAACAGTGAACTTTCTCAAGTCATCTTATGCCTCCAATCCCGCACAATATAAGCATGGACGAGGTAAAAGAAAATCTACATACAATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTATATATCTAATGATGAAGATGGCGAAGATGACAATTCATTTGACAGTTTCATAGATGACAGGACCAACCCTACAGCAGCCAGTCAGCCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTCAGTCAAGCACCGAGTAAGGGAGGGCTTGATTTTCCTGCCACCTTCACTCCTGACCGTGTGACTATGGCAGCAAGTACTAGTGAAAGTGGGGATTCTTCATGGAATCATTTCCATACAGATCCAAACAAACAGTCAGCAAATCGCACTTTGGAATCCGTTAGCATCGACCAGATAACCTCAGAAGCAGTGTTTTCAAGTTGTTGTCCTGTGGGAAATGGGACAGAGATAAGAAGTCACAAACGAAGATTGTCGTTTTACCACTCTGAACACTTCCCAAGTATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGAAGTGGAGGATGTCGATGCAACTACAGATGTTTTATGTGATGATGAGTTTTATAATGAGCTCGATCTTGACGAGTTGGAGGTGAAAGCAACTTTGCTTCTAAAAGGGAAATTAGATTTGTCCAATCAGAAGCAAGATACGGTCTCTCAATCTCACTCACCCAACCTTGACATTTTTTGTTCTCCTTCATTTGACCTTGGGATATGA 3732 0.4121 MASNNPLDIMENEEFDWEAAAREIDVVCQMTSDAQEKGKEKGKQQTTLDRFVSIANAKKESSIPTPTPQLEEDDENPTFVHHIDAEAAKTWIYPVNVPLRDYQFAITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVTQQIEACHNIVGIPQEWTVDMTGHLSPPKRAQLWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRELMAVPVQLRILALTATPGSKQQTVQAVIDNLHVSRLEYRGETDHDVISYVHNRKIELIQVAMGPEAVEINNMFMEVIRPIVARLTKIGVIQNRDYRTLSPCQLLEIRESFRQRLRQDLSHVNYEDVEGYFGVLITLYYIHKLLSSHGIRPAHEMLERKLKQGYFAKFMSKSEVILKARQLMQQTLFHGASSPKLSKMLEVLLEHFKTNDPQNSRVIIFSNYRESVRDIMNALEDIGELVRATEFIGQSSGKTMKGQSQKVQQAVLTKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVFACEGSELKGYLRKEAKSKTISRHMRNGGINSFSFHPSPRMIPHVFKPEVQYVELSIEKFIPRQKNVKDDKLHISPSKGKLTVAEINLLETYFQPTGENICRTSLIAFPHFQTFPSRVHKVKHSSGTLMLIDMMQRLQGLASFPKDEETSSLQEDLCLGHSKPVTSTKLDKANMGNESCSRHAMRMSVVSVNCLDLDSCHVGTQSKDFVDPTWEEETCEGDEAIPETPIFKRSVSNEGYNAGEMLNLMELETSSLVADACINGMKDEELSPRLTNLIKSGVVPESPIDERGKSGYHSVIRDYILPVSVHKEQNVSSLRSRETQMVDNDKGTDKDVCTYSVNETQSPLLDLKNCIIRRGRVFLSQTEEGHIHNSDQSLSEEALPADCGEMSESIKPARRFKRLRKAEDTESNRDQKNNSTVNFLKSSYASNPAQYKHGRGKRKSTYNVRDFIEEEAEVSSDAYISNDEDGEDDNSFDSFIDDRTNPTAASQPEASRMDMMAIYRRSLLSQAPSKGGLDFPATFTPDRVTMAASTSESGDSSWNHFHTDPNKQSANRTLESVSIDQITSEAVFSSCCPVGNGTEIRSHKRRLSFYHSEHFPSMNLEQEFALQSKKEVEDVDATTDVLCDDEFYNELDLDELEVKATLLLKGKLDLSNQKQDTVSQSHSPNLDIFCSPSFDLGI* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0005 1243 CDD FANCM_ID 306 420 - -
Pvu11g0005 1243 MobiDBLite consensus disorder prediction 976 994 - -
Pvu11g0005 1243 CDD DEXDc_FANCM 97 278 IPR044749 GO:0005524
Pvu11g0005 1243 MobiDBLite consensus disorder prediction 965 1008 - -
Pvu11g0005 1243 MobiDBLite consensus disorder prediction 1021 1037 - -
Pvu11g0005 1243 Gene3D - 95 289 IPR027417 -
Pvu11g0005 1243 SMART ultradead3 95 295 IPR014001 -
Pvu11g0005 1243 Gene3D hef helicase domain 303 424 - -
Pvu11g0005 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 568 IPR027417 -
Pvu11g0005 1243 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 274 IPR014001 -
Pvu11g0005 1243 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 15 734 - -
Pvu11g0005 1243 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 764 1208 - -
Pvu11g0005 1243 MobiDBLite consensus disorder prediction 1093 1115 - -
Pvu11g0005 1243 Gene3D - 425 590 IPR027417 -
Pvu11g0005 1243 CDD SF2_C_FANCM_Hef 430 562 - -
Pvu11g0005 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 410 IPR027417 -
Pvu11g0005 1243 MobiDBLite consensus disorder prediction 1020 1054 - -
Pvu11g0005 1243 Pfam Helicase conserved C-terminal domain 439 555 IPR001650 -
Pvu11g0005 1243 PANTHER FANCONI ANEMIA GROUP M PROTEIN 15 734 IPR039686 GO:0006281|GO:0043138
Pvu11g0005 1243 PANTHER FANCONI ANEMIA GROUP M PROTEIN 764 1208 IPR039686 GO:0006281|GO:0043138
Pvu11g0005 1243 Pfam Type III restriction enzyme, res subunit 112 256 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pvu11g0005 1243 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 432 596 IPR001650 -
Pvu11g0005 1243 SMART helicmild6 465 556 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0005 Pvu-Chr11 30343 42544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0005 405 554 Eukaryotic Initiation Factors Gene Family AT3G13920 28.105 5.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0005 K10896 - gmx:100820078 1812.35