Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1714 ATGCACCACAACCTTAACCATGCAAGGTTGTGGCTTGCTTTGCTTGCGGTCTCAACCACCTCAGTTCATTGCAAAACCTCCTCCGAAGATGTCGCAGCCCTTAATGTGATGTATTCCAGCTTGAATTCCCCTTCAAAGCTGAGTGGCTGGAAATCAAGTGGAGGTGATCCATGTGGTGAATCCTGGAAAGGAATCAAATGCTCAGGCTCTTCTGTCACAGAAATAAATTTGTCAGACATGGGACTGTCTGGATCAACGGGCTACCAGTTGTCCAGCTTATCATCAGTAACCTACTTTGATTTGAGCAACAACAACCTCAAGGGTGATATACCGTATCAGCTTCCTCCAAAAGCTCGTCATATAGATCTTTCGAACAATGGCTTCACGGGAAGTATACCTTTTTCCGTTTCTCAGATGGATGAGCTCAGCCAGCTAAATCTTGGACATAATCAGCTCCAAAACCAGTTGGGAGATATGTTTGAAAAGCTCACTAAACTCAAACTACTGGACGTATCATTCAATTCTCTATCAGGAAACCTACCTCAGAGTCTGAAATCGCTCAAAAACCTCAAGAAGTTGCACCTTCAAAACAACCAATTCACTGGTTCAATAAATGTTCTTGCCAACCTTCCACTTGAAGAGTTGCATGTCGAAAACAACAAATTTACTGGTTGGGTTCCTGAGGAGTTGAAGAGTATAAATGACTTGCAAACTGGAGGAAACTCATGGTCAAAGGGACAAGCACCTCCTCCTCCTCCTGGTACTCCCCCTATCAAACATCCCAAGAAAAAGAAAGAAAAATCCGTTATTAGTGGAGTAGCTATAGCAGGCATAAATTTTGGCTTACTGGCAATAATTATAATTATTGTTGCTCTTTGTAAAAGAAAGTCATCGAAACCTTCTTCACAATTTACCGATGAAGAGAGGCGTAGCCATCATAGATCTCGTACACCCCTTGCATCTCAGGAGTTATCAACAGATCCGGGTGCTAGTGTCAACAAAGAATTCAAAGGAGGATTGAACTCATTGGATTCCACTTCAATTGACGTAAAGGCTTTGCAAAAATCTCCATCAATTGGTGTCAGGTCCTCTGCCTCCGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATTCTAGAAGAAGTGCATCAATCCGTATTACTACTTTTTCGCTGGCAGATCTGTACTCGGCTACTGCTAGTTTTGGTTCAGGTCGACTTCTTGGTGAAGGATCCATAGGATGTGTTTATCGAGCTAAATATGCTGATGGAAAGGTATTGGCTGTAAAAAAAATCAACCCTTCGCTTTTCGAAGGTGGTGCCCCTGAGGAATTCTCGCAGATTGTTTCAAAACTCAGCAAACTTCACCACCCAAATATTGTTGAGCTTGTTGGTTATTGTTCGGAACAGGAGCACATGTTAATTTATGATTATTTTAGAAATGGCTCTCTCCATGGCTTTTTACACTTGTCAGATGACTTCAGCAAACCACTCACTTGGAACACAAGAATCAGAATTGCATTGGGAACAGCTCGGGCTATTGAGTACCTGCATGAAACTTGTTCTCCTCCTTTATTGCACAAGAATATTAAGTCCTCGAATATTTTGCTTGACACGGACCTGAATCCTCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCACCGGAATGCACAAAACCTTCAGCCTTCACACTGAAGAGTGATGTATACAGTTTTGGGGTAGTGATGCTGGAACTTCTCACAGGTCGAATGGCTTTCGACAGTTCAAAGCCAAAAGCAGAACAATGTCTGGTTCGTTGGGCAACTCCACTTCTTCACGACATTAACGCCGTAGAGAAAATGGTGGACCCTGCCTTGCGGGGGCTCTACCCTCCTAAGTCACTCTTCCGATTTGCTGATGTCATCGCTCTCTCTGTTCAGTCTGAACCTGAATTTCGGCCACCTGTGTCAGAGTTAGTTCAGGCTTTAATGCGATTGGTTCAACGTTCAAGTATGACACTGAGGGAGGATTTTGATTGA 2070 0.4319 MHHNLNHARLWLALLAVSTTSVHCKTSSEDVAALNVMYSSLNSPSKLSGWKSSGGDPCGESWKGIKCSGSSVTEINLSDMGLSGSTGYQLSSLSSVTYFDLSNNNLKGDIPYQLPPKARHIDLSNNGFTGSIPFSVSQMDELSQLNLGHNQLQNQLGDMFEKLTKLKLLDVSFNSLSGNLPQSLKSLKNLKKLHLQNNQFTGSINVLANLPLEELHVENNKFTGWVPEELKSINDLQTGGNSWSKGQAPPPPPGTPPIKHPKKKKEKSVISGVAIAGINFGLLAIIIIIVALCKRKSSKPSSQFTDEERRSHHRSRTPLASQELSTDPGASVNKEFKGGLNSLDSTSIDVKALQKSPSIGVRSSASDCVQSFNDNEFANRLNSRRSASIRITTFSLADLYSATASFGSGRLLGEGSIGCVYRAKYADGKVLAVKKINPSLFEGGAPEEFSQIVSKLSKLHHPNIVELVGYCSEQEHMLIYDYFRNGSLHGFLHLSDDFSKPLTWNTRIRIALGTARAIEYLHETCSPPLLHKNIKSSNILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAFTLKSDVYSFGVVMLELLTGRMAFDSSKPKAEQCLVRWATPLLHDINAVEKMVDPALRGLYPPKSLFRFADVIALSVQSEPEFRPPVSELVQALMRLVQRSSMTLREDFD* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1714 689 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Pvu10g1714 689 Gene3D Transferase(Phosphotransferase) domain 1 483 688 - -
Pvu10g1714 689 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 18 688 - -
Pvu10g1714 689 ProSiteProfiles Protein kinase domain profile. 406 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu10g1714 689 MobiDBLite consensus disorder prediction 300 331 - -
Pvu10g1714 689 Gene3D Ribonuclease Inhibitor 24 257 IPR032675 -
Pvu10g1714 689 PANTHER OS01G0253100 PROTEIN 18 688 IPR045271 GO:0004714|GO:0006468
Pvu10g1714 689 Pfam Protein tyrosine and serine/threonine kinase 409 673 IPR001245 GO:0004672|GO:0006468
Pvu10g1714 689 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Pvu10g1714 689 Gene3D Phosphorylase Kinase; domain 1 366 482 - -
Pvu10g1714 689 MobiDBLite consensus disorder prediction 300 317 - -
Pvu10g1714 689 SUPERFAMILY Protein kinase-like (PK-like) 385 673 IPR011009 -
Pvu10g1714 689 MobiDBLite consensus disorder prediction 236 265 - -
Pvu10g1714 689 SUPERFAMILY L domain-like 26 237 - -
Pvu10g1714 689 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1714 Pvu-Chr10 43185070 43189889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1714 8 688 Strubbelig Receptor Gene Family AT1G78980 59.275 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pvu10g1714 PK_Tyr_Ser-Thr 4.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1714 - - pvu:PHAVU_010G165200g 1090.1