Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1680 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGATGCCAGCAAGCTCAAGTGGGATGAAAAGATTAAGATTCAGTTTAGATTCTCTGCCACTTCCTGGTCGAGGAAGAAAAAAAGCATCGAAATCGTTTAGGCAAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTGAAGACAGGGGTGACAACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTATTTGACCCTCAAGACAAGACCCTTCTGTACTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGCTTTGCTGTCACAATGAGAACAATATGCGATGCCATTTATCTCATCCGCATAAGTTTTCAGTTCCGAACTGCTTACATTGCTCCTTCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAGATAGCCAAGAGATATTTACGACGTTACTTCATCGTTGACTTCATTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGACGTGTAGAGGTATTGGAAACAAAAACGTTACTGTTGAGAATTGTGATCCTGCAATATTTTCCAAGGTTTATACGTTTTCTACCTTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCATTGCTCGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCATATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACACCTGCTGGAAGAATGCTTGTAAAGAAGTAGAAAGGTGCAATACACATTTCTTGTACTGTGCGAATTCGAACAAGCATATGCCAGGGTATGATAGTTGGAGAAATGTCAGCGAAGGTGTTCTGAAAAGTCGTTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAATTCTGCTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACGTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTACTTCCTCCAGAGCTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCTTAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTGAAGGAAGCTGACTTCTGTGGAGAAGAGCTACTAACGTGGGCATTGGACCCCAAATCTGCAGCTAACTTGCCATCATCAACAAGGACGGTGAAGGCTATGAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGTAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGGAAGATAGCAGAACAGCGGAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAGAGCCTTGGTAAAGCGTCCTGAACCTGCTGCTTTTTCCTCATCTACCCTTGGACTTGGTACAACCGTCTATGCATCTCGCTTTGCAGCAAATGCACTTCGTGGTCACAGGCTTCGTGGTTCAAGTTCCAAGGACATGATCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTTTGGTGAACACTGA 2256 0.4309 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSMPASSSGMKRLRFSLDSLPLPGRGRKKASKSFRQGVKKGSDGLKTFGRSLKTGVTTWAVFPEDLKVSEKKVFDPQDKTLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTMRTICDAIYLIRISFQFRTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFIVDFISVLPIPQIVVWKYLYRSGRVEVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDTCWKNACKEVERCNTHFLYCANSNKHMPGYDSWRNVSEGVLKSRCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAMNEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSARALVKRPEPAAFSSSTLGLGTTVYASRFAANALRGHRLRGSSSKDMIKLQKPPEPDFSDFGEH* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1680 751 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 748 - -
Pvu10g1680 751 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 748 - -
Pvu10g1680 751 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
Pvu10g1680 751 SUPERFAMILY Voltage-gated potassium channels 102 432 - -
Pvu10g1680 751 Gene3D Helix hairpin bin 437 501 - -
Pvu10g1680 751 Gene3D Jelly Rolls 508 628 IPR014710 -
Pvu10g1680 751 SMART cnmp_10 510 641 IPR000595 -
Pvu10g1680 751 CDD CAP_ED 510 641 IPR000595 -
Pvu10g1680 751 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Pvu10g1680 751 Gene3D - 112 435 - -
Pvu10g1680 751 MobiDBLite consensus disorder prediction 728 751 - -
Pvu10g1680 751 Pfam Ion transport protein 110 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu10g1680 751 ProSiteProfiles cAMP/cGMP binding motif profile. 510 593 IPR000595 -
Pvu10g1680 751 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1680 Pvu-Chr10 42964054 42967401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1680 6 745 Ion Channels AT1G15990 69.600 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1680 K05391 - gmx:100810453 1335.86