Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1666 ATGTCAGGTGAAGAGGTTGTTGTCCCAGCTGAGCCAGCTGCTACCATTCCTGGTGAGCCCATGGATATCATGACTGCCTTACAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCCCGAGGCCTTCACGAGGCTGCAAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTGGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTTGTCAAGGCCATTTGTGCAGAGCACAATGTTAGCCTCCTCACTGTTCCTAGTGCAAAGACCTTGGGTGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTCACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGTGAGGAGCATGAAGCCTATAACGTTGTTCTGCAGCATGTCAAGTCTCAATGA 423 0.4917 MSGEEVVVPAEPAATIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKAICAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1666 140 Gene3D - 8 140 IPR029064 -
Pvu10g1666 140 SUPERFAMILY L30e-like 20 138 IPR029064 -
Pvu10g1666 140 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 119 IPR004038 -
Pvu10g1666 140 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PRINTS Ribosomal protein S12E family signature 110 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pvu10g1666 140 PANTHER 40S RIBOSOMAL PROTEIN S12 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1666 Pvu-Chr10 42872468 42874369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1666 16 140 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 73.600 4.57e-66 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1666 K02951 - gmx:100305687 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1883 5 40363221 40365195 Pvu10g1666 10 42872468 42874369 PCT